Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VMP1Q96GC9 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VMP1Q96GC9 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.06■□□□□ 0.96
VMP1Q96GC9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
VMP1Q96GC9 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VMP1Q96GC9 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VMP1Q96GC9 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.06■□□□□ 0.96
VMP1Q96GC9 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VMP1Q96GC9 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.06■□□□□ 0.96
VMP1Q96GC9 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VMP1Q96GC9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VMP1Q96GC9 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VMP1Q96GC9 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
VMP1Q96GC9 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
VMP1Q96GC9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
VMP1Q96GC9 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.05■□□□□ 0.96
VMP1Q96GC9 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.05■□□□□ 0.96
VMP1Q96GC9 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.05■□□□□ 0.96
VMP1Q96GC9 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VMP1Q96GC9 AC009102.2-201ENST00000606772 1639 ntBASIC21.05■□□□□ 0.96
VMP1Q96GC9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.05■□□□□ 0.96
VMP1Q96GC9 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.05■□□□□ 0.96
VMP1Q96GC9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VMP1Q96GC9 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
VMP1Q96GC9 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VMP1Q96GC9 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VMP1Q96GC9 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.05■□□□□ 0.96
VMP1Q96GC9 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VMP1Q96GC9 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
VMP1Q96GC9 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.04■□□□□ 0.96
VMP1Q96GC9 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
VMP1Q96GC9 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.04■□□□□ 0.96
VMP1Q96GC9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VMP1Q96GC9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
VMP1Q96GC9 AC233723.2-201ENST00000623798 2106 ntBASIC21.04■□□□□ 0.96
VMP1Q96GC9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
VMP1Q96GC9 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.04■□□□□ 0.96
VMP1Q96GC9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.04■□□□□ 0.96
VMP1Q96GC9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.04■□□□□ 0.96
VMP1Q96GC9 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
VMP1Q96GC9 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
VMP1Q96GC9 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.04■□□□□ 0.96
VMP1Q96GC9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
VMP1Q96GC9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VMP1Q96GC9 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VMP1Q96GC9 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VMP1Q96GC9 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VMP1Q96GC9 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.03■□□□□ 0.96
VMP1Q96GC9 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.03■□□□□ 0.96
VMP1Q96GC9 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VMP1Q96GC9 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VMP1Q96GC9 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
VMP1Q96GC9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VMP1Q96GC9 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
VMP1Q96GC9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VMP1Q96GC9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.02■□□□□ 0.96
VMP1Q96GC9 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VMP1Q96GC9 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.02■□□□□ 0.96
VMP1Q96GC9 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VMP1Q96GC9 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VMP1Q96GC9 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.02■□□□□ 0.96
VMP1Q96GC9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.02■□□□□ 0.96
VMP1Q96GC9 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
VMP1Q96GC9 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VMP1Q96GC9 AC137767.1-201ENST00000602918 1920 ntBASIC21.02■□□□□ 0.95
VMP1Q96GC9 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VMP1Q96GC9 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.01■□□□□ 0.95
VMP1Q96GC9 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
VMP1Q96GC9 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
VMP1Q96GC9 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
VMP1Q96GC9 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.01■□□□□ 0.95
VMP1Q96GC9 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
VMP1Q96GC9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.01■□□□□ 0.95
VMP1Q96GC9 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VMP1Q96GC9 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VMP1Q96GC9 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VMP1Q96GC9 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VMP1Q96GC9 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.01■□□□□ 0.95
VMP1Q96GC9 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
VMP1Q96GC9 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VMP1Q96GC9 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21■□□□□ 0.95
VMP1Q96GC9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VMP1Q96GC9 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21■□□□□ 0.95
VMP1Q96GC9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21■□□□□ 0.95
VMP1Q96GC9 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21■□□□□ 0.95
VMP1Q96GC9 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
VMP1Q96GC9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21■□□□□ 0.95
VMP1Q96GC9 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21■□□□□ 0.95
VMP1Q96GC9 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21■□□□□ 0.95
VMP1Q96GC9 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21■□□□□ 0.95
VMP1Q96GC9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
VMP1Q96GC9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
VMP1Q96GC9 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.99■□□□□ 0.95
VMP1Q96GC9 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VMP1Q96GC9 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
VMP1Q96GC9 C17orf82-201ENST00000623772 1530 ntBASIC20.99■□□□□ 0.95
VMP1Q96GC9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.99■□□□□ 0.95
VMP1Q96GC9 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VMP1Q96GC9 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
VMP1Q96GC9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms