Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA3Q8IX90 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.68■□□□□ 0.74
SKA3Q8IX90 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.68■□□□□ 0.74
SKA3Q8IX90 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SKA3Q8IX90 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA3Q8IX90 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SKA3Q8IX90 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SKA3Q8IX90 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.68■□□□□ 0.74
SKA3Q8IX90 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA3Q8IX90 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.68■□□□□ 0.74
SKA3Q8IX90 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA3Q8IX90 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.67■□□□□ 0.74
SKA3Q8IX90 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.67■□□□□ 0.74
SKA3Q8IX90 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.67■□□□□ 0.74
SKA3Q8IX90 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.67■□□□□ 0.74
SKA3Q8IX90 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.67■□□□□ 0.74
SKA3Q8IX90 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.67■□□□□ 0.74
SKA3Q8IX90 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.67■□□□□ 0.74
SKA3Q8IX90 AC131212.1-201ENST00000613771 668 ntBASIC19.67■□□□□ 0.74
SKA3Q8IX90 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA3Q8IX90 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA3Q8IX90 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA3Q8IX90 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SKA3Q8IX90 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.66■□□□□ 0.74
SKA3Q8IX90 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SKA3Q8IX90 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SKA3Q8IX90 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SKA3Q8IX90 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.66■□□□□ 0.74
SKA3Q8IX90 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.66■□□□□ 0.74
SKA3Q8IX90 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.66■□□□□ 0.74
SKA3Q8IX90 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.66■□□□□ 0.74
SKA3Q8IX90 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.66■□□□□ 0.74
SKA3Q8IX90 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA3Q8IX90 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SKA3Q8IX90 AC144652.1-201ENST00000609974 1624 ntBASIC19.65■□□□□ 0.74
SKA3Q8IX90 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SKA3Q8IX90 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SKA3Q8IX90 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SKA3Q8IX90 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SKA3Q8IX90 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
SKA3Q8IX90 DUSP8P5-201ENST00000422884 1815 ntBASIC19.65■□□□□ 0.74
SKA3Q8IX90 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SKA3Q8IX90 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SKA3Q8IX90 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.65■□□□□ 0.74
SKA3Q8IX90 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SKA3Q8IX90 C17orf82-201ENST00000623772 1530 ntBASIC19.65■□□□□ 0.74
SKA3Q8IX90 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SKA3Q8IX90 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SKA3Q8IX90 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.64■□□□□ 0.74
SKA3Q8IX90 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA3Q8IX90 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SKA3Q8IX90 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SKA3Q8IX90 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA3Q8IX90 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.64■□□□□ 0.73
SKA3Q8IX90 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA3Q8IX90 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SKA3Q8IX90 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SKA3Q8IX90 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA3Q8IX90 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.63■□□□□ 0.73
SKA3Q8IX90 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA3Q8IX90 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA3Q8IX90 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
SKA3Q8IX90 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA3Q8IX90 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.63■□□□□ 0.73
SKA3Q8IX90 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SKA3Q8IX90 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SKA3Q8IX90 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA3Q8IX90 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.63■□□□□ 0.73
SKA3Q8IX90 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.63■□□□□ 0.73
SKA3Q8IX90 AL512631.2-201ENST00000604634 923 ntBASIC19.63■□□□□ 0.73
SKA3Q8IX90 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SKA3Q8IX90 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.63■□□□□ 0.73
SKA3Q8IX90 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SKA3Q8IX90 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.62■□□□□ 0.73
SKA3Q8IX90 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.62■□□□□ 0.73
SKA3Q8IX90 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA3Q8IX90 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA3Q8IX90 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.62■□□□□ 0.73
SKA3Q8IX90 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.62■□□□□ 0.73
SKA3Q8IX90 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
SKA3Q8IX90 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA3Q8IX90 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.62■□□□□ 0.73
SKA3Q8IX90 AL353803.4-201ENST00000565882 1934 ntBASIC19.62■□□□□ 0.73
SKA3Q8IX90 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SKA3Q8IX90 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.62■□□□□ 0.73
SKA3Q8IX90 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SKA3Q8IX90 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA3Q8IX90 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SKA3Q8IX90 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA3Q8IX90 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms