Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 C17orf82-201ENST00000623772 1530 ntBASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 AC079630.1-202ENST00000618127 1840 ntBASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX6-3A6NJ46 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX6-3A6NJ46 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
NKX6-3A6NJ46 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.71■□□□□ 0.59
NKX6-3A6NJ46 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NKX6-3A6NJ46 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.71■□□□□ 0.59
NKX6-3A6NJ46 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.71■□□□□ 0.59
NKX6-3A6NJ46 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.71■□□□□ 0.59
NKX6-3A6NJ46 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
NKX6-3A6NJ46 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 AC131281.2-201ENST00000520478 145 ntBASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 AC092068.2-201ENST00000590491 1708 ntBASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 AC092171.4-201ENST00000609130 632 ntBASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 AC241377.3-202ENST00000626088 1088 ntBASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 AC241585.3-202ENST00000628937 1088 ntBASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 AC245100.8-202ENST00000629247 1058 ntBASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX6-3A6NJ46 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX6-3A6NJ46 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC18.69■□□□□ 0.58
NKX6-3A6NJ46 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX6-3A6NJ46 AL512631.2-201ENST00000604634 923 ntBASIC18.69■□□□□ 0.58
NKX6-3A6NJ46 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX6-3A6NJ46 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.69■□□□□ 0.58
NKX6-3A6NJ46 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX6-3A6NJ46 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
NKX6-3A6NJ46 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX6-3A6NJ46 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX6-3A6NJ46 FP325331.1-202ENST00000623531 1380 ntBASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 AC009086.3-201ENST00000623486 1008 ntBASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 AC008406.3-201ENST00000620001 1374 ntBASIC18.68■□□□□ 0.58
NKX6-3A6NJ46 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 LINC01529-204ENST00000636474 1715 ntBASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 AL136116.3-201ENST00000402907 1138 ntBASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 RASSF1-AS1-201ENST00000629828 790 ntBASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX6-3A6NJ46 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.66■□□□□ 0.58
NKX6-3A6NJ46 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.66■□□□□ 0.58
NKX6-3A6NJ46 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NKX6-3A6NJ46 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.66■□□□□ 0.58
NKX6-3A6NJ46 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NKX6-3A6NJ46 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
NKX6-3A6NJ46 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.66■□□□□ 0.58
NKX6-3A6NJ46 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.66■□□□□ 0.58
NKX6-3A6NJ46 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NKX6-3A6NJ46 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.66■□□□□ 0.58
NKX6-3A6NJ46 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.65■□□□□ 0.58
NKX6-3A6NJ46 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms