Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 RPM1RPM1 483 nt13.77□□□□□ -0.21
RPN11P43588 GAL1YBR020W 1587 nt13.76□□□□□ -0.21
RPN11P43588 CCT4YDL143W 1587 nt13.75□□□□□ -0.21
RPN11P43588 SAM1YLR180W 1149 nt13.73□□□□□ -0.21
RPN11P43588 RAD51YER095W 1203 nt13.72□□□□□ -0.21
RPN11P43588 UBA4YHR111W 1323 nt13.71□□□□□ -0.21
RPN11P43588 STB1YNL309W 1263 nt13.71□□□□□ -0.21
RPN11P43588 SPC25YER018C 666 nt13.7□□□□□ -0.22
RPN11P43588 TRM5YHR070W 1500 nt13.69□□□□□ -0.22
RPN11P43588 RBG1YAL036C 1110 nt13.67□□□□□ -0.22
RPN11P43588 PAU7YAR020C 168 nt13.67□□□□□ -0.22
RPN11P43588 YMR090WYMR090W 684 nt13.67□□□□□ -0.22
RPN11P43588 BIO4YNR057C 714 nt13.66□□□□□ -0.22
RPN11P43588 YDR524C-BYDR524C-B 201 nt13.63□□□□□ -0.23
RPN11P43588 SWC5YBR231C 912 nt13.63□□□□□ -0.23
RPN11P43588 SPT8YLR055C 1809 nt13.62□□□□□ -0.23
RPN11P43588 YSR3YKR053C 1215 nt13.62□□□□□ -0.23
RPN11P43588 YMR226CYMR226C 804 nt13.62□□□□□ -0.23
RPN11P43588 VPS60YDR486C 690 nt13.61□□□□□ -0.23
RPN11P43588 XYL2YLR070C 1071 nt13.61□□□□□ -0.23
RPN11P43588 GPI16YHR188C 1833 nt13.61□□□□□ -0.23
RPN11P43588 SCC4YER147C 1875 nt13.61□□□□□ -0.23
RPN11P43588 ALG3YBL082C 1377 nt13.6□□□□□ -0.23
RPN11P43588 SHB17YKR043C 816 nt13.58□□□□□ -0.24
RPN11P43588 SDH1YKL148C 1923 nt13.53□□□□□ -0.24
RPN11P43588 SIM1YIL123W 1431 nt13.52□□□□□ -0.25
RPN11P43588 DDR2YOL052C-A 186 nt13.51□□□□□ -0.25
RPN11P43588 ATF2YGR177C 1608 nt13.49□□□□□ -0.25
RPN11P43588 YNR029CYNR029C 1290 nt13.47□□□□□ -0.25
RPN11P43588 YDR010CYDR010C 333 nt13.46□□□□□ -0.25
RPN11P43588 FEN2YCR028C 1539 nt13.44□□□□□ -0.26
RPN11P43588 YNL195CYNL195C 786 nt13.44□□□□□ -0.26
RPN11P43588 YDL086C-AYDL086C-A 435 nt13.42□□□□□ -0.26
RPN11P43588 YFL067WYFL067W 528 nt13.42□□□□□ -0.26
RPN11P43588 TIM17YJL143W 477 nt13.41□□□□□ -0.26
RPN11P43588 AIM45YPR004C 1035 nt13.41□□□□□ -0.26
RPN11P43588 YCR087WYCR087W 516 nt13.38□□□□□ -0.27
RPN11P43588 ANP1YEL036C 1503 nt13.36□□□□□ -0.27
RPN11P43588 PHO89YBR296C 1725 nt13.36□□□□□ -0.27
RPN11P43588 RRT12YCR045C 1476 nt13.36□□□□□ -0.27
RPN11P43588 YLR349WYLR349W 507 nt13.35□□□□□ -0.27
RPN11P43588 STE4YOR212W 1272 nt13.34□□□□□ -0.27
RPN11P43588 RET2YFR051C 1641 nt13.34□□□□□ -0.27
RPN11P43588 YBR220CYBR220C 1683 nt13.32□□□□□ -0.28
RPN11P43588 ERF2YLR246W 1080 nt13.32□□□□□ -0.28
RPN11P43588 YIR016WYIR016W 798 nt13.3□□□□□ -0.28
RPN11P43588 YLR111WYLR111W 333 nt13.3□□□□□ -0.28
RPN11P43588 SHM2YLR058C 1410 nt13.29□□□□□ -0.28
RPN11P43588 CRR1YLR213C 1269 nt13.26□□□□□ -0.29
RPN11P43588 SGT2YOR007C 1041 nt13.23□□□□□ -0.29
RPN11P43588 ADH7YCR105W 1086 nt13.22□□□□□ -0.29
RPN11P43588 PAU15YIR041W 375 nt13.21□□□□□ -0.29
RPN11P43588 NIT1YIL164C 600 nt13.2□□□□□ -0.3
RPN11P43588 SNG1YGR197C 1644 nt13.2□□□□□ -0.3
RPN11P43588 MRP20YDR405W 792 nt13.18□□□□□ -0.3
RPN11P43588 COQ2YNR041C 1119 nt13.16□□□□□ -0.3
RPN11P43588 YHL050CYHL050C 2094 nt13.14□□□□□ -0.31
RPN11P43588 XDJ1YLR090W 1380 nt13.13□□□□□ -0.31
RPN11P43588 FUN14YAL008W 597 nt13.12□□□□□ -0.31
RPN11P43588 MIC10YCL057C-A 294 nt13.12□□□□□ -0.31
RPN11P43588 YLR437C-AYLR437C-A 228 nt13.11□□□□□ -0.31
RPN11P43588 HEM12YDR047W 1089 nt13.1□□□□□ -0.31
RPN11P43588 YLR279WYLR279W 390 nt13.1□□□□□ -0.31
RPN11P43588 CAB5YDR196C 726 nt13.04□□□□□ -0.32
RPN11P43588 RAD23YEL037C 1197 nt13.04□□□□□ -0.32
RPN11P43588 SDH5YOL071W 489 nt13.03□□□□□ -0.32
RPN11P43588 YJL195CYJL195C 702 nt13.01□□□□□ -0.33
RPN11P43588 GDH3YAL062W 1374 nt13□□□□□ -0.33
RPN11P43588 SFA1YDL168W 1161 nt12.99□□□□□ -0.33
RPN11P43588 RPL4BYDR012W 1089 nt12.97□□□□□ -0.33
RPN11P43588 RPL4AYBR031W 1089 nt12.97□□□□□ -0.33
RPN11P43588 ESS1YJR017C 513 nt12.96□□□□□ -0.33
RPN11P43588 LYS4YDR234W 2082 nt12.95□□□□□ -0.34
RPN11P43588 RPS14BYJL191W 417 nt12.93□□□□□ -0.34
RPN11P43588 GPN2YOR262W 1044 nt12.93□□□□□ -0.34
RPN11P43588 SSA4YER103W 1929 nt12.91□□□□□ -0.34
RPN11P43588 RIB3YDR487C 627 nt12.9□□□□□ -0.34
RPN11P43588 tS(GCU)LtS(GCU)L 80 nt12.88□□□□□ -0.35
RPN11P43588 YHL019W-AYHL019W-A 594 nt12.87□□□□□ -0.35
RPN11P43588 ADH1YOL086C 1047 nt12.86□□□□□ -0.35
RPN11P43588 MIC12YBR262C 321 nt12.86□□□□□ -0.35
RPN11P43588 CLB6YGR109C 1143 nt12.85□□□□□ -0.35
RPN11P43588 PUP1YOR157C 786 nt12.85□□□□□ -0.35
RPN11P43588 BNA2YJR078W 1362 nt12.83□□□□□ -0.36
RPN11P43588 YGR012WYGR012W 1182 nt12.83□□□□□ -0.36
RPN11P43588 CPD1YGR247W 720 nt12.83□□□□□ -0.36
RPN11P43588 NCP1YHR042W 2076 nt12.82□□□□□ -0.36
RPN11P43588 YEL008WYEL008W 381 nt12.8□□□□□ -0.36
RPN11P43588 NAP1YKR048C 1254 nt12.78□□□□□ -0.36
RPN11P43588 TSC10YBR265W 963 nt12.78□□□□□ -0.36
RPN11P43588 YGR201CYGR201C 678 nt12.77□□□□□ -0.37
RPN11P43588 SEN2YLR105C 1134 nt12.77□□□□□ -0.37
RPN11P43588 UTH1YKR042W 1098 nt12.75□□□□□ -0.37
RPN11P43588 AVT6YER119C 1347 nt12.74□□□□□ -0.37
RPN11P43588 YCR102CYCR102C 1107 nt12.73□□□□□ -0.37
RPN11P43588 HHO1YPL127C 777 nt12.72□□□□□ -0.37
RPN11P43588 YHR056W-AYHR056W-A 435 nt12.71□□□□□ -0.37
RPN11P43588 YPI1YFR003C 468 nt12.67□□□□□ -0.38
RPN11P43588 SHH4YLR164W 507 nt12.66□□□□□ -0.38
RPN11P43588 SEC11YIR022W 504 nt12.65□□□□□ -0.38
Retrieved 100 of 7,029 protein–RNA pairs in 12.4 ms