Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHGA3Q9Y5H0 AL022069.1-201ENST00000568025 1636 ntBASIC21.76■■□□□ 1.07
PCDHGA3Q9Y5H0 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHGA3Q9Y5H0 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDHGA3Q9Y5H0 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDHGA3Q9Y5H0 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDHGA3Q9Y5H0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PCDHGA3Q9Y5H0 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 AC099791.2-201ENST00000605725 427 ntBASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 AC092666.2-201ENST00000613287 246 ntBASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 RASA4CP-201ENST00000424092 1398 ntBASIC21.74■■□□□ 1.07
PCDHGA3Q9Y5H0 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 AC009102.2-201ENST00000606772 1639 ntBASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.73■■□□□ 1.07
PCDHGA3Q9Y5H0 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.72■■□□□ 1.07
PCDHGA3Q9Y5H0 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 AC027682.1-201ENST00000562846 899 ntBASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 CA15P2-201ENST00000611168 834 ntBASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 AC241377.3-202ENST00000626088 1088 ntBASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 AC241585.3-202ENST00000628937 1088 ntBASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 AC245100.8-202ENST00000629247 1058 ntBASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHGA3Q9Y5H0 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHGA3Q9Y5H0 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PCDHGA3Q9Y5H0 AC104564.3-201ENST00000582367 638 ntBASIC21.7■■□□□ 1.06
PCDHGA3Q9Y5H0 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHGA3Q9Y5H0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.7■■□□□ 1.06
PCDHGA3Q9Y5H0 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHGA3Q9Y5H0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHGA3Q9Y5H0 AC068473.5-201ENST00000616428 2072 ntBASIC21.7■■□□□ 1.06
PCDHGA3Q9Y5H0 C17orf82-201ENST00000623772 1530 ntBASIC21.7■■□□□ 1.06
PCDHGA3Q9Y5H0 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHGA3Q9Y5H0 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHGA3Q9Y5H0 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.69■■□□□ 1.06
PCDHGA3Q9Y5H0 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.69■■□□□ 1.06
PCDHGA3Q9Y5H0 MIR6821-201ENST00000617625 74 ntBASIC21.69■■□□□ 1.06
PCDHGA3Q9Y5H0 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHGA3Q9Y5H0 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA3Q9Y5H0 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA3Q9Y5H0 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.67■■□□□ 1.06
PCDHGA3Q9Y5H0 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.67■■□□□ 1.06
PCDHGA3Q9Y5H0 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.67■■□□□ 1.06
PCDHGA3Q9Y5H0 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.67■■□□□ 1.06
PCDHGA3Q9Y5H0 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.67■■□□□ 1.06
PCDHGA3Q9Y5H0 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.67■■□□□ 1.06
PCDHGA3Q9Y5H0 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.67■■□□□ 1.06
PCDHGA3Q9Y5H0 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms