Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA3Q8IX90 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SKA3Q8IX90 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA3Q8IX90 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA3Q8IX90 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.84■□□□□ 0.77
SKA3Q8IX90 AL356441.2-201ENST00000443009 864 ntBASIC19.84■□□□□ 0.77
SKA3Q8IX90 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.84■□□□□ 0.77
SKA3Q8IX90 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SKA3Q8IX90 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SKA3Q8IX90 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SKA3Q8IX90 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA3Q8IX90 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SKA3Q8IX90 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SKA3Q8IX90 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SKA3Q8IX90 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SKA3Q8IX90 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SKA3Q8IX90 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SKA3Q8IX90 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SKA3Q8IX90 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SKA3Q8IX90 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.83■□□□□ 0.77
SKA3Q8IX90 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SKA3Q8IX90 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.83■□□□□ 0.76
SKA3Q8IX90 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SKA3Q8IX90 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SKA3Q8IX90 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SKA3Q8IX90 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SKA3Q8IX90 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.82■□□□□ 0.76
SKA3Q8IX90 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SKA3Q8IX90 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SKA3Q8IX90 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SKA3Q8IX90 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.82■□□□□ 0.76
SKA3Q8IX90 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SKA3Q8IX90 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SKA3Q8IX90 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.82■□□□□ 0.76
SKA3Q8IX90 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SKA3Q8IX90 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SKA3Q8IX90 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SKA3Q8IX90 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SKA3Q8IX90 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.81■□□□□ 0.76
SKA3Q8IX90 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SKA3Q8IX90 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SKA3Q8IX90 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SKA3Q8IX90 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA3Q8IX90 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SKA3Q8IX90 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SKA3Q8IX90 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA3Q8IX90 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SKA3Q8IX90 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA3Q8IX90 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA3Q8IX90 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.8■□□□□ 0.76
SKA3Q8IX90 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA3Q8IX90 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SKA3Q8IX90 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
SKA3Q8IX90 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA3Q8IX90 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA3Q8IX90 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.79■□□□□ 0.76
SKA3Q8IX90 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SKA3Q8IX90 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.79■□□□□ 0.76
SKA3Q8IX90 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.79■□□□□ 0.76
SKA3Q8IX90 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SKA3Q8IX90 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SKA3Q8IX90 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.79■□□□□ 0.76
SKA3Q8IX90 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA3Q8IX90 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA3Q8IX90 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA3Q8IX90 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SKA3Q8IX90 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.78■□□□□ 0.76
SKA3Q8IX90 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SKA3Q8IX90 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA3Q8IX90 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA3Q8IX90 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SKA3Q8IX90 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SKA3Q8IX90 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.78■□□□□ 0.76
SKA3Q8IX90 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.78■□□□□ 0.76
SKA3Q8IX90 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SKA3Q8IX90 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA3Q8IX90 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
SKA3Q8IX90 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SKA3Q8IX90 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.77■□□□□ 0.76
SKA3Q8IX90 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.77■□□□□ 0.76
SKA3Q8IX90 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.77■□□□□ 0.76
SKA3Q8IX90 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SKA3Q8IX90 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SKA3Q8IX90 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.75
SKA3Q8IX90 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.76■□□□□ 0.75
SKA3Q8IX90 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SKA3Q8IX90 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SKA3Q8IX90 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SKA3Q8IX90 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SKA3Q8IX90 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.76■□□□□ 0.75
SKA3Q8IX90 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SKA3Q8IX90 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.76■□□□□ 0.75
SKA3Q8IX90 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.76■□□□□ 0.75
SKA3Q8IX90 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SKA3Q8IX90 AL117332.1-201ENST00000622628 974 ntBASIC19.76■□□□□ 0.75
SKA3Q8IX90 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SKA3Q8IX90 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SKA3Q8IX90 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SKA3Q8IX90 ANOS2P-203ENST00000472227 1816 ntBASIC19.76■□□□□ 0.75
SKA3Q8IX90 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms