Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC26.95■■□□□ 1.9
DDX4Q9NQI0 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC26.95■■□□□ 1.9
DDX4Q9NQI0 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.95■■□□□ 1.9
DDX4Q9NQI0 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC26.95■■□□□ 1.9
DDX4Q9NQI0 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
DDX4Q9NQI0 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
DDX4Q9NQI0 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC26.94■■□□□ 1.9
DDX4Q9NQI0 pRNA.6-201ENST00000610482 90 ntBASIC26.94■■□□□ 1.9
DDX4Q9NQI0 pRNA.5-201ENST00000612139 90 ntBASIC26.94■■□□□ 1.9
DDX4Q9NQI0 pRNA.11-201ENST00000618423 90 ntBASIC26.94■■□□□ 1.9
DDX4Q9NQI0 pRNA.13-201ENST00000619112 90 ntBASIC26.94■■□□□ 1.9
DDX4Q9NQI0 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
DDX4Q9NQI0 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
DDX4Q9NQI0 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
DDX4Q9NQI0 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
DDX4Q9NQI0 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
DDX4Q9NQI0 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
DDX4Q9NQI0 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.93■■□□□ 1.9
DDX4Q9NQI0 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.93■■□□□ 1.9
DDX4Q9NQI0 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
DDX4Q9NQI0 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.93■■□□□ 1.9
DDX4Q9NQI0 AC142381.3-201ENST00000568208 1670 ntBASIC26.92■■□□□ 1.9
DDX4Q9NQI0 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
DDX4Q9NQI0 ASB1-202ENST00000409297 878 ntTSL 5 BASIC26.92■■□□□ 1.9
DDX4Q9NQI0 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
DDX4Q9NQI0 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC26.92■■□□□ 1.9
DDX4Q9NQI0 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC26.92■■□□□ 1.9
DDX4Q9NQI0 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
DDX4Q9NQI0 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
DDX4Q9NQI0 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
DDX4Q9NQI0 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
DDX4Q9NQI0 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC26.92■■□□□ 1.9
DDX4Q9NQI0 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC26.91■■□□□ 1.9
DDX4Q9NQI0 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
DDX4Q9NQI0 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
DDX4Q9NQI0 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
DDX4Q9NQI0 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC26.9■■□□□ 1.9
DDX4Q9NQI0 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC26.9■■□□□ 1.9
DDX4Q9NQI0 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
DDX4Q9NQI0 SNX3-202ENST00000349379 890 ntTSL 2 BASIC26.9■■□□□ 1.9
DDX4Q9NQI0 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC26.9■■□□□ 1.9
DDX4Q9NQI0 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
DDX4Q9NQI0 AC233992.3-201ENST00000607491 485 ntBASIC26.9■■□□□ 1.9
DDX4Q9NQI0 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
DDX4Q9NQI0 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
DDX4Q9NQI0 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
DDX4Q9NQI0 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC26.89■■□□□ 1.9
DDX4Q9NQI0 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC26.89■■□□□ 1.9
DDX4Q9NQI0 BX842568.3-201ENST00000418104 571 ntBASIC26.89■■□□□ 1.9
DDX4Q9NQI0 RHOF-204ENST00000537265 699 ntTSL 2 BASIC26.89■■□□□ 1.9
DDX4Q9NQI0 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC26.89■■□□□ 1.9
DDX4Q9NQI0 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
DDX4Q9NQI0 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC26.88■■□□□ 1.89
DDX4Q9NQI0 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC26.88■■□□□ 1.89
DDX4Q9NQI0 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC26.88■■□□□ 1.89
DDX4Q9NQI0 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC26.88■■□□□ 1.89
DDX4Q9NQI0 MIR6821-201ENST00000617625 74 ntBASIC26.88■■□□□ 1.89
DDX4Q9NQI0 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26.88■■□□□ 1.89
DDX4Q9NQI0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC26.88■■□□□ 1.89
DDX4Q9NQI0 AC020928.2-201ENST00000588717 2197 ntBASIC26.88■■□□□ 1.89
DDX4Q9NQI0 AC141586.4-201ENST00000624558 1573 ntBASIC26.88■■□□□ 1.89
DDX4Q9NQI0 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
DDX4Q9NQI0 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
DDX4Q9NQI0 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
DDX4Q9NQI0 AC087623.3-201ENST00000607047 1098 ntBASIC26.87■■□□□ 1.89
DDX4Q9NQI0 MIR5787-201ENST00000611784 55 ntBASIC26.87■■□□□ 1.89
DDX4Q9NQI0 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
DDX4Q9NQI0 EI24-213ENST00000618552 1747 ntTSL 5 BASIC26.87■■□□□ 1.89
DDX4Q9NQI0 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
DDX4Q9NQI0 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
DDX4Q9NQI0 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
DDX4Q9NQI0 AC097381.1-201ENST00000429019 1296 ntBASIC26.86■■□□□ 1.89
DDX4Q9NQI0 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC26.86■■□□□ 1.89
DDX4Q9NQI0 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
DDX4Q9NQI0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC26.86■■□□□ 1.89
DDX4Q9NQI0 AC092666.2-201ENST00000613287 246 ntBASIC26.86■■□□□ 1.89
DDX4Q9NQI0 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC26.86■■□□□ 1.89
DDX4Q9NQI0 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
DDX4Q9NQI0 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
DDX4Q9NQI0 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX4Q9NQI0 IRS3P-201ENST00000223076 1006 ntBASIC26.85■■□□□ 1.89
DDX4Q9NQI0 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX4Q9NQI0 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX4Q9NQI0 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC26.85■■□□□ 1.89
DDX4Q9NQI0 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX4Q9NQI0 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX4Q9NQI0 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX4Q9NQI0 MPST-208ENST00000628507 698 ntTSL 5 BASIC26.84■■□□□ 1.89
DDX4Q9NQI0 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
DDX4Q9NQI0 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
DDX4Q9NQI0 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
DDX4Q9NQI0 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
DDX4Q9NQI0 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
DDX4Q9NQI0 JTB-203ENST00000368589 1216 ntTSL 2 BASIC26.83■■□□□ 1.89
DDX4Q9NQI0 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
DDX4Q9NQI0 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC26.83■■□□□ 1.89
DDX4Q9NQI0 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC26.83■■□□□ 1.89
DDX4Q9NQI0 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC26.83■■□□□ 1.89
DDX4Q9NQI0 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
DDX4Q9NQI0 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms