Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.31■□□□□ 0.84
HOXC12P31275 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC12P31275 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.31■□□□□ 0.84
HOXC12P31275 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
HOXC12P31275 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC12P31275 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC12P31275 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
HOXC12P31275 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC12P31275 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC12P31275 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
HOXC12P31275 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HOXC12P31275 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC12P31275 AF131216.4-201ENST00000638924 1588 ntBASIC20.29■□□□□ 0.84
HOXC12P31275 AC022211.4-201ENST00000625094 2161 ntBASIC20.29■□□□□ 0.84
HOXC12P31275 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC12P31275 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC12P31275 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC12P31275 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.29■□□□□ 0.84
HOXC12P31275 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.29■□□□□ 0.84
HOXC12P31275 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.29■□□□□ 0.84
HOXC12P31275 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC12P31275 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC12P31275 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC12P31275 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC12P31275 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
HOXC12P31275 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC12P31275 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.28■□□□□ 0.84
HOXC12P31275 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC12P31275 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC12P31275 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC12P31275 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC12P31275 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC12P31275 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC12P31275 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
HOXC12P31275 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC12P31275 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.27■□□□□ 0.84
HOXC12P31275 AP003733.4-201ENST00000623785 1697 ntBASIC20.27■□□□□ 0.84
HOXC12P31275 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC12P31275 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
HOXC12P31275 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXC12P31275 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC12P31275 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC12P31275 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
HOXC12P31275 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.27■□□□□ 0.84
HOXC12P31275 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.27■□□□□ 0.84
HOXC12P31275 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
HOXC12P31275 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC12P31275 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC12P31275 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HOXC12P31275 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.27■□□□□ 0.83
HOXC12P31275 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.27■□□□□ 0.83
HOXC12P31275 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
HOXC12P31275 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
HOXC12P31275 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HOXC12P31275 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXC12P31275 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
HOXC12P31275 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXC12P31275 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXC12P31275 MIR3621-201ENST00000580529 85 ntBASIC20.26■□□□□ 0.83
HOXC12P31275 AL117332.1-201ENST00000622628 974 ntBASIC20.26■□□□□ 0.83
HOXC12P31275 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 AC142381.3-201ENST00000568208 1670 ntBASIC20.26■□□□□ 0.83
HOXC12P31275 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC12P31275 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.25■□□□□ 0.83
HOXC12P31275 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC12P31275 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC12P31275 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.25■□□□□ 0.83
HOXC12P31275 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXC12P31275 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC12P31275 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC12P31275 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HOXC12P31275 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC12P31275 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC12P31275 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC12P31275 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC12P31275 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC12P31275 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC12P31275 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC12P31275 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC12P31275 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC12P31275 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.24■□□□□ 0.83
HOXC12P31275 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXC12P31275 AC133561.4-201ENST00000566112 224 ntBASIC20.24■□□□□ 0.83
HOXC12P31275 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
HOXC12P31275 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXC12P31275 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC12P31275 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC12P31275 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXC12P31275 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC12P31275 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms