Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC139795.1-202ENST00000500444 432 ntBASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 PKD1P6-201ENST00000343738 4769 ntBASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
PDLIM3Q53GG5 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 MOB2-207ENST00000614710 705 ntTSL 5 BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 REST-210ENST00000638187 1334 ntTSL 5 BASIC18.96■□□□□ 0.63
PDLIM3Q53GG5 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM3Q53GG5 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.95■□□□□ 0.62
PDLIM3Q53GG5 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM3Q53GG5 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC18.95■□□□□ 0.62
PDLIM3Q53GG5 DUX4L9-201ENST00000449051 1259 ntBASIC18.95■□□□□ 0.62
PDLIM3Q53GG5 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM3Q53GG5 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM3Q53GG5 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PDLIM3Q53GG5 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 MIR6089-201ENST00000616698 64 ntBASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDLIM3Q53GG5 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDLIM3Q53GG5 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 AL157400.5-201ENST00000507624 621 ntBASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDLIM3Q53GG5 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 MIR3960-201ENST00000583311 91 ntBASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.91■□□□□ 0.62
PDLIM3Q53GG5 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM3Q53GG5 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM3Q53GG5 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM3Q53GG5 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM3Q53GG5 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM3Q53GG5 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
PDLIM3Q53GG5 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PDLIM3Q53GG5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
PDLIM3Q53GG5 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PDLIM3Q53GG5 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
PDLIM3Q53GG5 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
PDLIM3Q53GG5 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC18.89■□□□□ 0.61
PDLIM3Q53GG5 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PDLIM3Q53GG5 AL139246.5-201ENST00000606645 996 ntBASIC18.89■□□□□ 0.61
PDLIM3Q53GG5 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
PDLIM3Q53GG5 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms