Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.85■□□□□ 0.61
TRAV40A0A0B4J280 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
TRAV40A0A0B4J280 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.84■□□□□ 0.61
TRAV40A0A0B4J280 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.84■□□□□ 0.61
TRAV40A0A0B4J280 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TRAV40A0A0B4J280 MIR6089-201ENST00000616698 64 ntBASIC18.84■□□□□ 0.61
TRAV40A0A0B4J280 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.84■□□□□ 0.61
TRAV40A0A0B4J280 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV40A0A0B4J280 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC18.84■□□□□ 0.61
TRAV40A0A0B4J280 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV40A0A0B4J280 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.61
TRAV40A0A0B4J280 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV40A0A0B4J280 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.83■□□□□ 0.6
TRAV40A0A0B4J280 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.83■□□□□ 0.6
TRAV40A0A0B4J280 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV40A0A0B4J280 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV40A0A0B4J280 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.83■□□□□ 0.6
TRAV40A0A0B4J280 MIR4466-201ENST00000606121 54 ntBASIC18.83■□□□□ 0.6
TRAV40A0A0B4J280 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TRAV40A0A0B4J280 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV40A0A0B4J280 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC18.83■□□□□ 0.6
TRAV40A0A0B4J280 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 AC004448.1-201ENST00000458332 883 ntBASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 AL512631.2-201ENST00000604634 923 ntBASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV40A0A0B4J280 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV40A0A0B4J280 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV40A0A0B4J280 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TRAV40A0A0B4J280 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV40A0A0B4J280 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAV40A0A0B4J280 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.8■□□□□ 0.6
TRAV40A0A0B4J280 RASSF1-AS1-201ENST00000629828 790 ntBASIC18.8■□□□□ 0.6
TRAV40A0A0B4J280 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
TRAV40A0A0B4J280 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAV40A0A0B4J280 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
TRAV40A0A0B4J280 CREM-210ENST00000374721 2020 ntTSL 5 BASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 AL139246.5-201ENST00000606645 996 ntBASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV40A0A0B4J280 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV40A0A0B4J280 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV40A0A0B4J280 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
TRAV40A0A0B4J280 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAV40A0A0B4J280 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV40A0A0B4J280 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAV40A0A0B4J280 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TRAV40A0A0B4J280 AC131274.2-201ENST00000580697 1507 ntBASIC18.78■□□□□ 0.6
TRAV40A0A0B4J280 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV40A0A0B4J280 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV40A0A0B4J280 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV40A0A0B4J280 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
TRAV40A0A0B4J280 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV40A0A0B4J280 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV40A0A0B4J280 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV40A0A0B4J280 AC096631.2-201ENST00000436136 790 ntBASIC18.77■□□□□ 0.6
TRAV40A0A0B4J280 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV40A0A0B4J280 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TRAV40A0A0B4J280 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV40A0A0B4J280 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV40A0A0B4J280 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV40A0A0B4J280 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAV40A0A0B4J280 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV40A0A0B4J280 AC005703.6-201ENST00000623265 1329 ntBASIC18.75■□□□□ 0.59
TRAV40A0A0B4J280 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV40A0A0B4J280 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.75■□□□□ 0.59
TRAV40A0A0B4J280 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms