Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
USP42Q9H9J4 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
USP42Q9H9J4 AC135279.3-201ENST00000610945 1311 ntBASIC29.83■■■□□ 2.37
USP42Q9H9J4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC29.83■■■□□ 2.37
USP42Q9H9J4 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
USP42Q9H9J4 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
USP42Q9H9J4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC29.82■■■□□ 2.37
USP42Q9H9J4 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC29.82■■■□□ 2.36
USP42Q9H9J4 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC29.82■■■□□ 2.36
USP42Q9H9J4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC29.82■■■□□ 2.36
USP42Q9H9J4 CREM-210ENST00000374721 2020 ntTSL 5 BASIC29.81■■■□□ 2.36
USP42Q9H9J4 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
USP42Q9H9J4 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
USP42Q9H9J4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
USP42Q9H9J4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC29.81■■■□□ 2.36
USP42Q9H9J4 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
USP42Q9H9J4 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC29.81■■■□□ 2.36
USP42Q9H9J4 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
USP42Q9H9J4 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
USP42Q9H9J4 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
USP42Q9H9J4 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC29.8■■■□□ 2.36
USP42Q9H9J4 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USP42Q9H9J4 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USP42Q9H9J4 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
USP42Q9H9J4 AC092803.2-201ENST00000564287 1899 ntBASIC29.79■■■□□ 2.36
USP42Q9H9J4 LGR4-203ENST00000480977 492 ntTSL 2 BASIC29.79■■■□□ 2.36
USP42Q9H9J4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USP42Q9H9J4 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC29.79■■■□□ 2.36
USP42Q9H9J4 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC29.79■■■□□ 2.36
USP42Q9H9J4 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC29.79■■■□□ 2.36
USP42Q9H9J4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC29.79■■■□□ 2.36
USP42Q9H9J4 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
USP42Q9H9J4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
USP42Q9H9J4 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC29.78■■■□□ 2.36
USP42Q9H9J4 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
USP42Q9H9J4 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC29.78■■■□□ 2.36
USP42Q9H9J4 EDA-201ENST00000338901 1233 ntBASIC29.77■■■□□ 2.36
USP42Q9H9J4 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
USP42Q9H9J4 AC024257.2-201ENST00000549699 147 ntBASIC29.77■■■□□ 2.36
USP42Q9H9J4 AC090877.2-201ENST00000558441 1738 ntBASIC29.77■■■□□ 2.36
USP42Q9H9J4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC29.77■■■□□ 2.36
USP42Q9H9J4 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC29.77■■■□□ 2.36
USP42Q9H9J4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC29.77■■■□□ 2.36
USP42Q9H9J4 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC29.77■■■□□ 2.36
USP42Q9H9J4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
USP42Q9H9J4 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.36
USP42Q9H9J4 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
USP42Q9H9J4 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC29.76■■■□□ 2.35
USP42Q9H9J4 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
USP42Q9H9J4 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC29.75■■■□□ 2.35
USP42Q9H9J4 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
USP42Q9H9J4 DUSP8P4-201ENST00000399538 1761 ntBASIC29.75■■■□□ 2.35
USP42Q9H9J4 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
USP42Q9H9J4 SRD5A1P1-201ENST00000442297 786 ntBASIC29.74■■■□□ 2.35
USP42Q9H9J4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC29.74■■■□□ 2.35
USP42Q9H9J4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC29.74■■■□□ 2.35
USP42Q9H9J4 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC29.73■■■□□ 2.35
USP42Q9H9J4 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC29.73■■■□□ 2.35
USP42Q9H9J4 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
USP42Q9H9J4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
USP42Q9H9J4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
USP42Q9H9J4 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC29.72■■■□□ 2.35
USP42Q9H9J4 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
USP42Q9H9J4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
USP42Q9H9J4 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC29.72■■■□□ 2.35
USP42Q9H9J4 AL355001.2-201ENST00000620617 1191 ntBASIC29.72■■■□□ 2.35
USP42Q9H9J4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC29.72■■■□□ 2.35
USP42Q9H9J4 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
USP42Q9H9J4 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
USP42Q9H9J4 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
USP42Q9H9J4 AC145676.1-201ENST00000514988 2004 ntBASIC29.72■■■□□ 2.35
USP42Q9H9J4 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
USP42Q9H9J4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
USP42Q9H9J4 AC104564.3-201ENST00000582367 638 ntBASIC29.71■■■□□ 2.35
USP42Q9H9J4 MIR5787-201ENST00000611784 55 ntBASIC29.71■■■□□ 2.35
USP42Q9H9J4 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC29.7■■■□□ 2.35
USP42Q9H9J4 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
USP42Q9H9J4 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
USP42Q9H9J4 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC29.7■■■□□ 2.34
USP42Q9H9J4 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
USP42Q9H9J4 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC29.7■■■□□ 2.34
USP42Q9H9J4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC29.69■■■□□ 2.34
USP42Q9H9J4 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC29.69■■■□□ 2.34
USP42Q9H9J4 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
USP42Q9H9J4 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC29.69■■■□□ 2.34
USP42Q9H9J4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC29.69■■■□□ 2.34
USP42Q9H9J4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
USP42Q9H9J4 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC29.69■■■□□ 2.34
USP42Q9H9J4 HYI-206ENST00000372434 1025 ntTSL 5 BASIC29.69■■■□□ 2.34
USP42Q9H9J4 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC29.69■■■□□ 2.34
USP42Q9H9J4 LBH-205ENST00000407930 756 ntTSL 2 BASIC29.69■■■□□ 2.34
USP42Q9H9J4 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
USP42Q9H9J4 AC105265.2-201ENST00000467189 838 ntBASIC29.69■■■□□ 2.34
USP42Q9H9J4 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
USP42Q9H9J4 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
USP42Q9H9J4 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
USP42Q9H9J4 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC29.68■■■□□ 2.34
USP42Q9H9J4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
USP42Q9H9J4 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
USP42Q9H9J4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC29.68■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms