Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
PTCD1O75127 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC30.11■■■□□ 2.41
PTCD1O75127 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
PTCD1O75127 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
PTCD1O75127 AL031432.3-201ENST00000607698 485 ntBASIC30.1■■■□□ 2.41
PTCD1O75127 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC30.1■■■□□ 2.41
PTCD1O75127 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC30.09■■■□□ 2.41
PTCD1O75127 AC010501.1-201ENST00000606270 1962 ntBASIC30.08■■■□□ 2.41
PTCD1O75127 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC30.08■■■□□ 2.41
PTCD1O75127 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC30.08■■■□□ 2.41
PTCD1O75127 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
PTCD1O75127 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
PTCD1O75127 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC30.07■■■□□ 2.4
PTCD1O75127 SRD5A1P1-201ENST00000442297 786 ntBASIC30.07■■■□□ 2.4
PTCD1O75127 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC30.07■■■□□ 2.4
PTCD1O75127 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
PTCD1O75127 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
PTCD1O75127 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
PTCD1O75127 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
PTCD1O75127 AC135279.3-201ENST00000610945 1311 ntBASIC30.06■■■□□ 2.4
PTCD1O75127 SUDS3P1-201ENST00000505831 966 ntBASIC30.06■■■□□ 2.4
PTCD1O75127 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC30.06■■■□□ 2.4
PTCD1O75127 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC30.06■■■□□ 2.4
PTCD1O75127 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC30.06■■■□□ 2.4
PTCD1O75127 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
PTCD1O75127 AC004448.1-201ENST00000458332 883 ntBASIC30.05■■■□□ 2.4
PTCD1O75127 AC024257.2-201ENST00000549699 147 ntBASIC30.05■■■□□ 2.4
PTCD1O75127 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC30.05■■■□□ 2.4
PTCD1O75127 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
PTCD1O75127 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
PTCD1O75127 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
PTCD1O75127 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
PTCD1O75127 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC30.04■■■□□ 2.4
PTCD1O75127 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
PTCD1O75127 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
PTCD1O75127 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
PTCD1O75127 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC30.04■■■□□ 2.4
PTCD1O75127 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
PTCD1O75127 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC30.04■■■□□ 2.4
PTCD1O75127 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC30.04■■■□□ 2.4
PTCD1O75127 AL121749.1-202ENST00000609313 2153 ntBASIC30.04■■■□□ 2.4
PTCD1O75127 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
PTCD1O75127 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC30.04■■■□□ 2.4
PTCD1O75127 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC30.03■■■□□ 2.4
PTCD1O75127 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.4
PTCD1O75127 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC30.03■■■□□ 2.4
PTCD1O75127 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC30.03■■■□□ 2.4
PTCD1O75127 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC30.03■■■□□ 2.4
PTCD1O75127 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.02■■■□□ 2.4
PTCD1O75127 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
PTCD1O75127 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
PTCD1O75127 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC30.02■■■□□ 2.4
PTCD1O75127 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
PTCD1O75127 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.4
PTCD1O75127 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC30.01■■■□□ 2.39
PTCD1O75127 RARRES2P6-201ENST00000567333 442 ntBASIC30.01■■■□□ 2.39
PTCD1O75127 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
PTCD1O75127 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
PTCD1O75127 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
PTCD1O75127 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
PTCD1O75127 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
PTCD1O75127 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC30■■■□□ 2.39
PTCD1O75127 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC30■■■□□ 2.39
PTCD1O75127 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
PTCD1O75127 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC30■■■□□ 2.39
PTCD1O75127 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC30■■■□□ 2.39
PTCD1O75127 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
PTCD1O75127 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC30■■■□□ 2.39
PTCD1O75127 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC30■■■□□ 2.39
PTCD1O75127 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
PTCD1O75127 GATM-206ENST00000558336 1522 ntTSL 2 BASIC30■■■□□ 2.39
PTCD1O75127 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
PTCD1O75127 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
PTCD1O75127 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC29.99■■■□□ 2.39
PTCD1O75127 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
PTCD1O75127 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
PTCD1O75127 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
PTCD1O75127 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC29.99■■■□□ 2.39
PTCD1O75127 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
PTCD1O75127 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
PTCD1O75127 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
PTCD1O75127 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC29.97■■■□□ 2.39
PTCD1O75127 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
PTCD1O75127 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
PTCD1O75127 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
PTCD1O75127 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
PTCD1O75127 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC29.96■■■□□ 2.39
PTCD1O75127 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC29.96■■■□□ 2.39
PTCD1O75127 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC29.96■■■□□ 2.39
PTCD1O75127 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
PTCD1O75127 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC29.96■■■□□ 2.39
PTCD1O75127 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
PTCD1O75127 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC29.96■■■□□ 2.39
PTCD1O75127 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC29.96■■■□□ 2.39
PTCD1O75127 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
PTCD1O75127 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
PTCD1O75127 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
PTCD1O75127 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC29.95■■■□□ 2.39
PTCD1O75127 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
PTCD1O75127 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC29.95■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms