Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC25.14■■□□□ 1.62
PAAF1Q9BRP4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.14■■□□□ 1.62
PAAF1Q9BRP4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC25.14■■□□□ 1.62
PAAF1Q9BRP4 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.61
PAAF1Q9BRP4 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
PAAF1Q9BRP4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.13■■□□□ 1.61
PAAF1Q9BRP4 AL117332.1-201ENST00000622628 974 ntBASIC25.13■■□□□ 1.61
PAAF1Q9BRP4 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC25.13■■□□□ 1.61
PAAF1Q9BRP4 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
PAAF1Q9BRP4 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PAAF1Q9BRP4 SLC6A10P-202ENST00000431994 2058 ntBASIC25.13■■□□□ 1.61
PAAF1Q9BRP4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.12■■□□□ 1.61
PAAF1Q9BRP4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.11■■□□□ 1.61
PAAF1Q9BRP4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PAAF1Q9BRP4 AC131281.2-201ENST00000520478 145 ntBASIC25.11■■□□□ 1.61
PAAF1Q9BRP4 MIR6724-1-201ENST00000616420 92 ntBASIC25.11■■□□□ 1.61
PAAF1Q9BRP4 MIR6724-2-201ENST00000616483 92 ntBASIC25.11■■□□□ 1.61
PAAF1Q9BRP4 MIR6724-4-201ENST00000617390 92 ntBASIC25.11■■□□□ 1.61
PAAF1Q9BRP4 MIR6724-3-201ENST00000622482 92 ntBASIC25.11■■□□□ 1.61
PAAF1Q9BRP4 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PAAF1Q9BRP4 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PAAF1Q9BRP4 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PAAF1Q9BRP4 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
PAAF1Q9BRP4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.09■■□□□ 1.61
PAAF1Q9BRP4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PAAF1Q9BRP4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.09■■□□□ 1.61
PAAF1Q9BRP4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PAAF1Q9BRP4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.09■■□□□ 1.61
PAAF1Q9BRP4 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PAAF1Q9BRP4 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
PAAF1Q9BRP4 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PAAF1Q9BRP4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.08■■□□□ 1.61
PAAF1Q9BRP4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.08■■□□□ 1.61
PAAF1Q9BRP4 SNX5-217ENST00000606557 1087 ntBASIC25.08■■□□□ 1.61
PAAF1Q9BRP4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25.08■■□□□ 1.61
PAAF1Q9BRP4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.08■■□□□ 1.61
PAAF1Q9BRP4 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.08■■□□□ 1.61
PAAF1Q9BRP4 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
PAAF1Q9BRP4 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.6
PAAF1Q9BRP4 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PAAF1Q9BRP4 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PAAF1Q9BRP4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.07■■□□□ 1.6
PAAF1Q9BRP4 MIR3621-201ENST00000580529 85 ntBASIC25.07■■□□□ 1.6
PAAF1Q9BRP4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PAAF1Q9BRP4 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC25.07■■□□□ 1.6
PAAF1Q9BRP4 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.07■■□□□ 1.6
PAAF1Q9BRP4 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PAAF1Q9BRP4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
PAAF1Q9BRP4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.06■■□□□ 1.6
PAAF1Q9BRP4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PAAF1Q9BRP4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
PAAF1Q9BRP4 AC145676.1-201ENST00000514988 2004 ntBASIC25.06■■□□□ 1.6
PAAF1Q9BRP4 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC25.06■■□□□ 1.6
PAAF1Q9BRP4 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.06■■□□□ 1.6
PAAF1Q9BRP4 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PAAF1Q9BRP4 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.05■■□□□ 1.6
PAAF1Q9BRP4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC25.05■■□□□ 1.6
PAAF1Q9BRP4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.05■■□□□ 1.6
PAAF1Q9BRP4 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.04■■□□□ 1.6
PAAF1Q9BRP4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.04■■□□□ 1.6
PAAF1Q9BRP4 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.04■■□□□ 1.6
PAAF1Q9BRP4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
PAAF1Q9BRP4 CEBPA-AS1-201ENST00000592982 2198 ntBASIC25.03■■□□□ 1.6
PAAF1Q9BRP4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PAAF1Q9BRP4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.03■■□□□ 1.6
PAAF1Q9BRP4 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.03■■□□□ 1.6
PAAF1Q9BRP4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.03■■□□□ 1.6
PAAF1Q9BRP4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PAAF1Q9BRP4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.03■■□□□ 1.6
PAAF1Q9BRP4 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PAAF1Q9BRP4 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PAAF1Q9BRP4 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
PAAF1Q9BRP4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.02■■□□□ 1.6
PAAF1Q9BRP4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC25.02■■□□□ 1.6
PAAF1Q9BRP4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PAAF1Q9BRP4 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC25.01■■□□□ 1.59
PAAF1Q9BRP4 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PAAF1Q9BRP4 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PAAF1Q9BRP4 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
PAAF1Q9BRP4 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PAAF1Q9BRP4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.01■■□□□ 1.59
PAAF1Q9BRP4 MIR4466-201ENST00000606121 54 ntBASIC25.01■■□□□ 1.59
PAAF1Q9BRP4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
PAAF1Q9BRP4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms