Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HDDC3Q8N4P3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.56■■□□□ 1.36
HDDC3Q8N4P3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.55■■□□□ 1.36
HDDC3Q8N4P3 MTDHP2-201ENST00000601468 714 ntBASIC23.55■■□□□ 1.36
HDDC3Q8N4P3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HDDC3Q8N4P3 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
HDDC3Q8N4P3 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
HDDC3Q8N4P3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.54■■□□□ 1.36
HDDC3Q8N4P3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
HDDC3Q8N4P3 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
HDDC3Q8N4P3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.54■■□□□ 1.36
HDDC3Q8N4P3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
HDDC3Q8N4P3 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HDDC3Q8N4P3 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
HDDC3Q8N4P3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
HDDC3Q8N4P3 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
HDDC3Q8N4P3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.53■■□□□ 1.36
HDDC3Q8N4P3 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HDDC3Q8N4P3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 AL117332.1-201ENST00000622628 974 ntBASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
HDDC3Q8N4P3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.51■■□□□ 1.35
HDDC3Q8N4P3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.51■■□□□ 1.35
HDDC3Q8N4P3 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HDDC3Q8N4P3 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.51■■□□□ 1.35
HDDC3Q8N4P3 AL356740.2-201ENST00000601559 647 ntBASIC23.51■■□□□ 1.35
HDDC3Q8N4P3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HDDC3Q8N4P3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HDDC3Q8N4P3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HDDC3Q8N4P3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HDDC3Q8N4P3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HDDC3Q8N4P3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
HDDC3Q8N4P3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
HDDC3Q8N4P3 AC005837.3-201ENST00000612163 286 ntBASIC23.5■■□□□ 1.35
HDDC3Q8N4P3 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.5■■□□□ 1.35
HDDC3Q8N4P3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 MIR6724-1-201ENST00000616420 92 ntBASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 MIR6724-2-201ENST00000616483 92 ntBASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 MIR6724-4-201ENST00000617390 92 ntBASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 AC110285.6-201ENST00000617652 491 ntBASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 MIR6724-3-201ENST00000622482 92 ntBASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.49■■□□□ 1.35
HDDC3Q8N4P3 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
HDDC3Q8N4P3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.48■■□□□ 1.35
HDDC3Q8N4P3 AC096631.2-201ENST00000436136 790 ntBASIC23.48■■□□□ 1.35
HDDC3Q8N4P3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.48■■□□□ 1.35
HDDC3Q8N4P3 MIR3621-201ENST00000580529 85 ntBASIC23.48■■□□□ 1.35
HDDC3Q8N4P3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
HDDC3Q8N4P3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
HDDC3Q8N4P3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
HDDC3Q8N4P3 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.47■■□□□ 1.35
HDDC3Q8N4P3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
HDDC3Q8N4P3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
HDDC3Q8N4P3 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
HDDC3Q8N4P3 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.45■■□□□ 1.34
HDDC3Q8N4P3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.34
HDDC3Q8N4P3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
HDDC3Q8N4P3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HDDC3Q8N4P3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
HDDC3Q8N4P3 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.45■■□□□ 1.34
HDDC3Q8N4P3 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.45■■□□□ 1.34
HDDC3Q8N4P3 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
HDDC3Q8N4P3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
HDDC3Q8N4P3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.44■■□□□ 1.34
HDDC3Q8N4P3 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.44■■□□□ 1.34
HDDC3Q8N4P3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
HDDC3Q8N4P3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
HDDC3Q8N4P3 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
HDDC3Q8N4P3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
HDDC3Q8N4P3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
HDDC3Q8N4P3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.43■■□□□ 1.34
HDDC3Q8N4P3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
HDDC3Q8N4P3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
HDDC3Q8N4P3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.43■■□□□ 1.34
HDDC3Q8N4P3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.42■■□□□ 1.34
HDDC3Q8N4P3 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.42■■□□□ 1.34
HDDC3Q8N4P3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC23.42■■□□□ 1.34
HDDC3Q8N4P3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
HDDC3Q8N4P3 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.41■■□□□ 1.34
HDDC3Q8N4P3 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.41■■□□□ 1.34
HDDC3Q8N4P3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
HDDC3Q8N4P3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.41■■□□□ 1.34
HDDC3Q8N4P3 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.41■■□□□ 1.34
HDDC3Q8N4P3 DUSP8P4-201ENST00000399538 1761 ntBASIC23.41■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms