Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ABCA4P78363 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.2■□□□□ 0.82
ABCA4P78363 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.2■□□□□ 0.82
ABCA4P78363 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ABCA4P78363 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ABCA4P78363 AL031432.3-201ENST00000607698 485 ntBASIC20.19■□□□□ 0.82
ABCA4P78363 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
ABCA4P78363 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.19■□□□□ 0.82
ABCA4P78363 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.18■□□□□ 0.82
ABCA4P78363 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ABCA4P78363 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ABCA4P78363 FOXO3B-201ENST00000395675 1928 ntBASIC20.18■□□□□ 0.82
ABCA4P78363 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ABCA4P78363 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.18■□□□□ 0.82
ABCA4P78363 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.18■□□□□ 0.82
ABCA4P78363 AC097639.1-201ENST00000565519 1891 ntBASIC20.18■□□□□ 0.82
ABCA4P78363 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.18■□□□□ 0.82
ABCA4P78363 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.18■□□□□ 0.82
ABCA4P78363 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ABCA4P78363 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ABCA4P78363 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.18■□□□□ 0.82
ABCA4P78363 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ABCA4P78363 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
ABCA4P78363 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.17■□□□□ 0.82
ABCA4P78363 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
ABCA4P78363 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
ABCA4P78363 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ABCA4P78363 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ABCA4P78363 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.17■□□□□ 0.82
ABCA4P78363 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.16■□□□□ 0.82
ABCA4P78363 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.16■□□□□ 0.82
ABCA4P78363 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
ABCA4P78363 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ABCA4P78363 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ABCA4P78363 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ABCA4P78363 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ABCA4P78363 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.16■□□□□ 0.82
ABCA4P78363 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ABCA4P78363 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ABCA4P78363 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
ABCA4P78363 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.15■□□□□ 0.82
ABCA4P78363 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.15■□□□□ 0.82
ABCA4P78363 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ABCA4P78363 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.15■□□□□ 0.82
ABCA4P78363 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ABCA4P78363 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.15■□□□□ 0.82
ABCA4P78363 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
ABCA4P78363 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.15■□□□□ 0.82
ABCA4P78363 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ABCA4P78363 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ABCA4P78363 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ABCA4P78363 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
ABCA4P78363 AC135279.3-201ENST00000610945 1311 ntBASIC20.13■□□□□ 0.81
ABCA4P78363 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ABCA4P78363 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.13■□□□□ 0.81
ABCA4P78363 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ABCA4P78363 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.12■□□□□ 0.81
ABCA4P78363 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ABCA4P78363 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ABCA4P78363 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
ABCA4P78363 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ABCA4P78363 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.11■□□□□ 0.81
ABCA4P78363 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.11■□□□□ 0.81
ABCA4P78363 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.11■□□□□ 0.81
ABCA4P78363 AC142086.6-201ENST00000621154 1765 ntBASIC20.11■□□□□ 0.81
ABCA4P78363 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ABCA4P78363 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
ABCA4P78363 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ABCA4P78363 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.11■□□□□ 0.81
ABCA4P78363 AC090877.2-201ENST00000558441 1738 ntBASIC20.11■□□□□ 0.81
ABCA4P78363 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
ABCA4P78363 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
ABCA4P78363 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
ABCA4P78363 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
ABCA4P78363 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ABCA4P78363 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.1■□□□□ 0.81
ABCA4P78363 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ABCA4P78363 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA4P78363 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA4P78363 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA4P78363 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.09■□□□□ 0.81
ABCA4P78363 PBX2P1-201ENST00000493219 1291 ntBASIC20.09■□□□□ 0.81
ABCA4P78363 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
ABCA4P78363 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.09■□□□□ 0.81
ABCA4P78363 AC024257.2-201ENST00000549699 147 ntBASIC20.09■□□□□ 0.81
ABCA4P78363 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA4P78363 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA4P78363 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.09■□□□□ 0.81
ABCA4P78363 AF213884.3-201ENST00000563833 479 ntBASIC20.09■□□□□ 0.81
ABCA4P78363 AC087623.3-201ENST00000607047 1098 ntBASIC20.09■□□□□ 0.81
ABCA4P78363 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA4P78363 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ABCA4P78363 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
ABCA4P78363 EDA-201ENST00000338901 1233 ntBASIC20.08■□□□□ 0.81
ABCA4P78363 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
ABCA4P78363 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ABCA4P78363 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.08■□□□□ 0.81
ABCA4P78363 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.08■□□□□ 0.8
ABCA4P78363 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
ABCA4P78363 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms