Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
TTC3P53804 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC25.44■■□□□ 1.66
TTC3P53804 AC097639.1-201ENST00000565519 1891 ntBASIC25.43■■□□□ 1.66
TTC3P53804 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
TTC3P53804 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.43■■□□□ 1.66
TTC3P53804 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.43■■□□□ 1.66
TTC3P53804 ERN1-208ENST00000606895 2068 ntBASIC25.43■■□□□ 1.66
TTC3P53804 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.42■■□□□ 1.66
TTC3P53804 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC25.42■■□□□ 1.66
TTC3P53804 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
TTC3P53804 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.42■■□□□ 1.66
TTC3P53804 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
TTC3P53804 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
TTC3P53804 AC090877.2-201ENST00000558441 1738 ntBASIC25.41■■□□□ 1.66
TTC3P53804 AC106739.1-201ENST00000617035 715 ntBASIC25.41■■□□□ 1.66
TTC3P53804 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC25.41■■□□□ 1.66
TTC3P53804 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
TTC3P53804 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
TTC3P53804 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
TTC3P53804 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.4■■□□□ 1.66
TTC3P53804 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
TTC3P53804 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
TTC3P53804 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
TTC3P53804 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.4■■□□□ 1.66
TTC3P53804 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
TTC3P53804 MIR6722-201ENST00000617286 78 ntBASIC25.39■■□□□ 1.66
TTC3P53804 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
TTC3P53804 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
TTC3P53804 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
TTC3P53804 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
TTC3P53804 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
TTC3P53804 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC25.37■■□□□ 1.65
TTC3P53804 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC25.37■■□□□ 1.65
TTC3P53804 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC25.37■■□□□ 1.65
TTC3P53804 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
TTC3P53804 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
TTC3P53804 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
TTC3P53804 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
TTC3P53804 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TTC3P53804 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
TTC3P53804 ZNRF2P3-201ENST00000424200 374 ntBASIC25.36■■□□□ 1.65
TTC3P53804 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
TTC3P53804 AL121749.1-202ENST00000609313 2153 ntBASIC25.36■■□□□ 1.65
TTC3P53804 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TTC3P53804 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TTC3P53804 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TTC3P53804 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TTC3P53804 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
TTC3P53804 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
TTC3P53804 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
TTC3P53804 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC25.35■■□□□ 1.65
TTC3P53804 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
TTC3P53804 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
TTC3P53804 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
TTC3P53804 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC25.34■■□□□ 1.65
TTC3P53804 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.34■■□□□ 1.65
TTC3P53804 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC25.34■■□□□ 1.65
TTC3P53804 AL031432.3-201ENST00000607698 485 ntBASIC25.34■■□□□ 1.65
TTC3P53804 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
TTC3P53804 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TTC3P53804 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TTC3P53804 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC25.33■■□□□ 1.65
TTC3P53804 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TTC3P53804 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
TTC3P53804 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
TTC3P53804 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
TTC3P53804 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
TTC3P53804 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TTC3P53804 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC25.32■■□□□ 1.64
TTC3P53804 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.32■■□□□ 1.64
TTC3P53804 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC25.31■■□□□ 1.64
TTC3P53804 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.31■■□□□ 1.64
TTC3P53804 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
TTC3P53804 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
TTC3P53804 EBPL-204ENST00000378272 766 ntTSL 3 BASIC25.31■■□□□ 1.64
TTC3P53804 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
TTC3P53804 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
TTC3P53804 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.31■■□□□ 1.64
TTC3P53804 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
TTC3P53804 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
TTC3P53804 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
TTC3P53804 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.3■■□□□ 1.64
TTC3P53804 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
TTC3P53804 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
TTC3P53804 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
TTC3P53804 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.29■■□□□ 1.64
TTC3P53804 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
TTC3P53804 AC010501.1-201ENST00000606270 1962 ntBASIC25.29■■□□□ 1.64
TTC3P53804 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
TTC3P53804 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
TTC3P53804 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.29■■□□□ 1.64
TTC3P53804 RARRES2P6-201ENST00000567333 442 ntBASIC25.29■■□□□ 1.64
TTC3P53804 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
TTC3P53804 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
TTC3P53804 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
TTC3P53804 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC25.28■■□□□ 1.64
TTC3P53804 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC25.28■■□□□ 1.64
TTC3P53804 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
TTC3P53804 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
TTC3P53804 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms