Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 BX664725.1-201ENST00000438252 379 ntBASIC19.38■□□□□ 0.69
TRAV40A0A0B4J280 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TRAV40A0A0B4J280 Z92544.1-202ENST00000571933 1220 ntBASIC19.38■□□□□ 0.69
TRAV40A0A0B4J280 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
TRAV40A0A0B4J280 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV40A0A0B4J280 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 KRT18P24-201ENST00000344739 1156 ntBASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 AL592295.1-201ENST00000400984 884 ntBASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 KRT125P-201ENST00000546827 989 ntBASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 AC120024.1-201ENST00000562672 995 ntBASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 AC131212.1-201ENST00000613771 668 ntBASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
TRAV40A0A0B4J280 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.36■□□□□ 0.69
TRAV40A0A0B4J280 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV40A0A0B4J280 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV40A0A0B4J280 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV40A0A0B4J280 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TRAV40A0A0B4J280 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV40A0A0B4J280 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV40A0A0B4J280 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV40A0A0B4J280 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRAV40A0A0B4J280 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV40A0A0B4J280 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.35■□□□□ 0.69
TRAV40A0A0B4J280 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV40A0A0B4J280 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV40A0A0B4J280 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
TRAV40A0A0B4J280 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAV40A0A0B4J280 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.34■□□□□ 0.69
TRAV40A0A0B4J280 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.34■□□□□ 0.69
TRAV40A0A0B4J280 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV40A0A0B4J280 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
TRAV40A0A0B4J280 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
TRAV40A0A0B4J280 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TRAV40A0A0B4J280 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
TRAV40A0A0B4J280 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV40A0A0B4J280 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV40A0A0B4J280 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV40A0A0B4J280 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.33■□□□□ 0.68
TRAV40A0A0B4J280 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC19.33■□□□□ 0.68
TRAV40A0A0B4J280 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV40A0A0B4J280 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
TRAV40A0A0B4J280 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV40A0A0B4J280 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRAV40A0A0B4J280 AL356441.2-201ENST00000443009 864 ntBASIC19.32■□□□□ 0.68
TRAV40A0A0B4J280 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAV40A0A0B4J280 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV40A0A0B4J280 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV40A0A0B4J280 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV40A0A0B4J280 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV40A0A0B4J280 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV40A0A0B4J280 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV40A0A0B4J280 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV40A0A0B4J280 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
TRAV40A0A0B4J280 MIR4787-201ENST00000607364 84 ntBASIC19.31■□□□□ 0.68
TRAV40A0A0B4J280 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV40A0A0B4J280 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV40A0A0B4J280 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV40A0A0B4J280 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV40A0A0B4J280 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV40A0A0B4J280 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.3■□□□□ 0.68
TRAV40A0A0B4J280 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV40A0A0B4J280 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV40A0A0B4J280 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV40A0A0B4J280 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
TRAV40A0A0B4J280 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV40A0A0B4J280 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV40A0A0B4J280 ERN1-208ENST00000606895 2068 ntBASIC19.29■□□□□ 0.68
TRAV40A0A0B4J280 MIR4281-201ENST00000580852 62 ntBASIC19.29■□□□□ 0.68
TRAV40A0A0B4J280 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV40A0A0B4J280 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV40A0A0B4J280 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV40A0A0B4J280 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAV40A0A0B4J280 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV40A0A0B4J280 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV40A0A0B4J280 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV40A0A0B4J280 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.27■□□□□ 0.68
TRAV40A0A0B4J280 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV40A0A0B4J280 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.27■□□□□ 0.68
TRAV40A0A0B4J280 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.27■□□□□ 0.68
TRAV40A0A0B4J280 AL121749.1-202ENST00000609313 2153 ntBASIC19.27■□□□□ 0.68
TRAV40A0A0B4J280 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms