Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 CLUH-206ENST00000572129 480 ntTSL 512.49□□□□□ -0.417e-9■■□□□ 12.2
LIN28BQ6ZN17 HYPK-201ENST00000406925 4777 ntAPPRIS P2 TSL 2 BASIC12.4□□□□□ -0.421e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-203ENST00000542343 1011 ntTSL 211.58□□□□□ -0.561e-6■■□□□ 12.2
LIN28BQ6ZN17 TFPI-207ENST00000421427 804 ntTSL 311□□□□□ -0.651e-6■■□□□ 12.2
LIN28BQ6ZN17 PSMA3-207ENST00000554812 1279 ntTSL 210.51□□□□□ -0.733e-9■■□□□ 12.2
LIN28BQ6ZN17 ARNT-206ENST00000497108 546 ntTSL 49.69□□□□□ -0.861e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-206ENST00000586649 340 ntTSL 59.67□□□□□ -0.861e-6■■□□□ 12.2
LIN28BQ6ZN17 ARNT-207ENST00000504358 571 ntTSL 49.66□□□□□ -0.861e-6■■□□□ 12.2
LIN28BQ6ZN17 MCM3-201ENST00000229854 3083 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.891e-6■■□□□ 12.2
LIN28BQ6ZN17 ELP3-202ENST00000380353 3078 ntTSL 2 BASIC9.49□□□□□ -0.891e-6■■□□□ 12.2
LIN28BQ6ZN17 ELP3-219ENST00000537665 3053 ntTSL 2 BASIC9.49□□□□□ -0.891e-6■■□□□ 12.2
LIN28BQ6ZN17 ELP3-201ENST00000256398 3452 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.911e-6■■□□□ 12.2
LIN28BQ6ZN17 SMYD3-216ENST00000492487 634 ntTSL 38.93□□□□□ -0.981e-6■■□□□ 12.2
LIN28BQ6ZN17 SMYD3-208ENST00000464398 540 ntTSL 38.87□□□□□ -0.991e-6■■□□□ 12.2
LIN28BQ6ZN17 ELP3-210ENST00000521015 3158 ntTSL 1 (best) BASIC8.79□□□□□ -11e-6■■□□□ 12.2
LIN28BQ6ZN17 MCM3-207ENST00000616552 3208 ntTSL 1 (best) BASIC8.73□□□□□ -1.011e-6■■□□□ 12.2
LIN28BQ6ZN17 ELP3-204ENST00000518112 2059 ntTSL 28.64□□□□□ -1.031e-6■■□□□ 12.2
LIN28BQ6ZN17 MCM3-205ENST00000596288 3169 ntTSL 1 (best) BASIC8.6□□□□□ -1.031e-6■■□□□ 12.2
LIN28BQ6ZN17 ARNT-209ENST00000505979 570 ntTSL 28.21□□□□□ -1.11e-6■■□□□ 12.2
LIN28BQ6ZN17 PSMA3-203ENST00000553665 925 ntTSL 27.68□□□□□ -1.183e-9■■□□□ 12.2
LIN28BQ6ZN17 PAFAH1B2-207ENST00000533206 685 ntTSL 27.33□□□□□ -1.241e-6■■□□□ 12.2
LIN28BQ6ZN17 PSMA3-209ENST00000555931 606 ntTSL 47.28□□□□□ -1.243e-9■■□□□ 12.2
LIN28BQ6ZN17 PSMA3-208ENST00000555743 640 ntTSL 26.94□□□□□ -1.33e-9■■□□□ 12.2
LIN28BQ6ZN17 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.333e-9■■□□□ 12.2
LIN28BQ6ZN17 TFPI-211ENST00000481132 7690 ntTSL 26.71□□□□□ -1.341e-6■■□□□ 12.2
LIN28BQ6ZN17 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC6.61□□□□□ -1.353e-9■■□□□ 12.2
LIN28BQ6ZN17 UBE3C-208ENST00000497368 776 ntTSL 26.36□□□□□ -1.391e-6■■□□□ 12.2
LIN28BQ6ZN17 ASAP1-214ENST00000524124 5478 ntAPPRIS ALT2 TSL 1 (best)6.35□□□□□ -1.391e-6■■□□□ 12.2
LIN28BQ6ZN17 PSMD5-204ENST00000373920 569 ntTSL 56.32□□□□□ -1.41e-6■■□□□ 12.2
LIN28BQ6ZN17 SMYD3-217ENST00000493441 823 ntTSL 26.08□□□□□ -1.441e-6■■□□□ 12.2
LIN28BQ6ZN17 SMYD3-213ENST00000488153 653 ntTSL 35.97□□□□□ -1.451e-6■■□□□ 12.2
LIN28BQ6ZN17 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.22□□□□□ -1.571e-6■■□□□ 12.2
LIN28BQ6ZN17 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.98□□□□□ -1.611e-6■■□□□ 12.2
LIN28BQ6ZN17 TFPI-210ENST00000453013 733 ntTSL 24.89□□□□□ -1.631e-6■■□□□ 12.2
LIN28BQ6ZN17 TFPI-209ENST00000437725 545 ntTSL 44.71□□□□□ -1.661e-6■■□□□ 12.2
LIN28BQ6ZN17 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.671e-6■■□□□ 12.2
LIN28BQ6ZN17 PSMA3-210ENST00000556321 500 ntTSL 24.37□□□□□ -1.713e-9■■□□□ 12.2
LIN28BQ6ZN17 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.741e-6■■□□□ 12.2
LIN28BQ6ZN17 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.15□□□□□ -1.753e-9■■□□□ 12.2
LIN28BQ6ZN17 TFPI-205ENST00000417013 554 ntTSL 24.08□□□□□ -1.761e-6■■□□□ 12.2
LIN28BQ6ZN17 PSMA3-211ENST00000557087 654 ntTSL 34.06□□□□□ -1.763e-9■■□□□ 12.2
LIN28BQ6ZN17 TFPI-208ENST00000435414 687 ntTSL 53.75□□□□□ -1.811e-6■■□□□ 12.2
LIN28BQ6ZN17 KDM3A-213ENST00000488971 975 ntTSL 33.49□□□□□ -1.851e-6■■□□□ 12.2
LIN28BQ6ZN17 TFPI-212ENST00000481389 599 ntTSL 53.41□□□□□ -1.861e-6■■□□□ 12.2
LIN28BQ6ZN17 EIF4G2-203ENST00000524932 1286 ntTSL 523.72■■□□□ 1.393e-9■■□□□ 12.2
LIN28BQ6ZN17 EEF1D-232ENST00000530445 1217 ntTSL 216.84■□□□□ 0.291e-7■■□□□ 12.2
LIN28BQ6ZN17 EEF1D-248ENST00000533494 758 ntTSL 514.25□□□□□ -0.131e-7■■□□□ 12.2
LIN28BQ6ZN17 EIF4G2-221ENST00000532082 1069 ntTSL 1 (best)12.43□□□□□ -0.423e-9■■□□□ 12.2
LIN28BQ6ZN17 EEF1D-226ENST00000529516 473 ntTSL 310.71□□□□□ -0.691e-7■■□□□ 12.2
LIN28BQ6ZN17 ALDH3A2-210ENST00000573505 3512 nt6.62□□□□□ -1.353e-9■■□□□ 12.2
LIN28BQ6ZN17 EIF4G2-209ENST00000527015 582 ntTSL 33.72□□□□□ -1.813e-9■■□□□ 12.2
LIN28BQ6ZN17 EIF4G2-224ENST00000532349 550 ntTSL 22.69□□□□□ -1.983e-9■■□□□ 12.2
LIN28BQ6ZN17 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.341e-7■■□□□ 12.2
LIN28BQ6ZN17 APMAP-202ENST00000451442 2117 ntTSL 512.48□□□□□ -0.411e-7■■□□□ 12.2
LIN28BQ6ZN17 YY1-202ENST00000553625 422 ntTSL 220.08■□□□□ 0.811e-6■■□□□ 12.2
LIN28BQ6ZN17 YY1-206ENST00000623799 2742 nt7.92□□□□□ -1.141e-6■■□□□ 12.2
LIN28BQ6ZN17 YY1-205ENST00000554804 1114 ntTSL 37.78□□□□□ -1.161e-6■■□□□ 12.2
LIN28BQ6ZN17 YY1-204ENST00000554579 826 ntTSL 25.8□□□□□ -1.481e-6■■□□□ 12.2
LIN28BQ6ZN17 AMBP-204ENST00000603230 1057 ntTSL 1 (best)17.17■□□□□ 0.344e-16■■□□□ 12.2
LIN28BQ6ZN17 SPTAN1-235ENST00000637434 1496 ntTSL 513.61□□□□□ -0.231e-7■■□□□ 12.2
LIN28BQ6ZN17 TF-205ENST00000462495 582 ntTSL 28.66□□□□□ -1.021e-50■■□□□ 12.2
LIN28BQ6ZN17 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.48e-11■■□□□ 12.2
LIN28BQ6ZN17 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.248e-11■■□□□ 12.2
LIN28BQ6ZN17 BMP4-205ENST00000558984 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.248e-11■■□□□ 12.2
LIN28BQ6ZN17 BMP4-202ENST00000417573 1784 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.448e-11■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.36■□□□□ 0.055e-7■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.75□□□□□ -0.055e-7■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.235e-7■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.485e-7■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.58□□□□□ -1.685e-7■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.88□□□□□ -1.795e-7■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.7□□□□□ -1.825e-7■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.58□□□□□ -1.845e-7■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.58□□□□□ -1.845e-7■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.45□□□□□ -1.865e-7■■□□□ 12.2
LIN28BQ6ZN17 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.28□□□□□ -1.885e-7■■□□□ 12.2
LIN28BQ6ZN17 ATP5I-202ENST00000505852 300 ntTSL 211.4□□□□□ -0.582e-7■■□□□ 12.2
LIN28BQ6ZN17 ATP5I-201ENST00000304312 365 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.682e-7■■□□□ 12.2
LIN28BQ6ZN17 UBE2H-208ENST00000490974 572 ntTSL 525.71■■□□□ 1.718e-7■■□□□ 12.2
LIN28BQ6ZN17 UBE2H-203ENST00000472396 758 ntTSL 523.14■■□□□ 1.298e-7■■□□□ 12.2
LIN28BQ6ZN17 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.738e-7■■□□□ 12.2
LIN28BQ6ZN17 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.24■□□□□ 0.518e-7■■□□□ 12.2
LIN28BQ6ZN17 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC14.6□□□□□ -0.076e-7■■□□□ 12.2
LIN28BQ6ZN17 AC068775.1-201ENST00000322446 2142 ntTSL 1 (best) BASIC11.57□□□□□ -0.566e-7■■□□□ 12.2
LIN28BQ6ZN17 GOLT1B-202ENST00000535593 813 ntTSL 1 (best)9.77□□□□□ -0.856e-7■■□□□ 12.2
LIN28BQ6ZN17 CENPC-203ENST00000506882 3436 ntTSL 1 (best)9.68□□□□□ -0.867e-10■■□□□ 12.2
LIN28BQ6ZN17 CENPC-201ENST00000273853 6940 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.877e-10■■□□□ 12.2
LIN28BQ6ZN17 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC8.46□□□□□ -1.066e-7■■□□□ 12.2
LIN28BQ6ZN17 GOLT1B-209ENST00000545113 555 ntTSL 28.46□□□□□ -1.066e-7■■□□□ 12.2
LIN28BQ6ZN17 GOLT1B-207ENST00000542194 562 ntTSL 37.24□□□□□ -1.256e-7■■□□□ 12.2
LIN28BQ6ZN17 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.97□□□□□ -1.296e-7■■□□□ 12.2
LIN28BQ6ZN17 GOLT1B-208ENST00000545093 700 ntTSL 26.68□□□□□ -1.346e-7■■□□□ 12.2
LIN28BQ6ZN17 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.346e-7■■□□□ 12.2
LIN28BQ6ZN17 GOLT1B-203ENST00000539025 1210 ntTSL 1 (best)6.44□□□□□ -1.386e-7■■□□□ 12.2
LIN28BQ6ZN17 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.88□□□□□ -1.476e-7■■□□□ 12.2
LIN28BQ6ZN17 UBE2H-209ENST00000496698 561 ntTSL 45.59□□□□□ -1.518e-7■■□□□ 12.2
LIN28BQ6ZN17 GOLT1B-204ENST00000539663 876 ntTSL 35.22□□□□□ -1.576e-7■■□□□ 12.2
LIN28BQ6ZN17 UBE2H-205ENST00000480245 436 ntTSL 34.74□□□□□ -1.658e-7■■□□□ 12.2
LIN28BQ6ZN17 CENPC-207ENST00000515140 933 ntTSL 1 (best)4.4□□□□□ -1.717e-10■■□□□ 12.2
LIN28BQ6ZN17 CENPC-206ENST00000513216 2799 ntTSL 52.82□□□□□ -1.967e-10■■□□□ 12.2
Retrieved 100 of 21,972 protein–RNA pairs in 1473.2 ms