Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.48e-7■■□□□ 12.5
LIN28BQ6ZN17 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.8□□□□□ -1.488e-7■■□□□ 12.5
LIN28BQ6ZN17 DAP3-219ENST00000479151 725 ntTSL 55.26□□□□□ -1.578e-7■■□□□ 12.5
LIN28BQ6ZN17 DAP3-224ENST00000497826 807 ntTSL 55.26□□□□□ -1.578e-7■■□□□ 12.5
LIN28BQ6ZN17 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.628e-7■■□□□ 12.5
LIN28BQ6ZN17 DAP3-208ENST00000463575 550 ntTSL 54.91□□□□□ -1.628e-7■■□□□ 12.5
LIN28BQ6ZN17 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.91□□□□□ -1.948e-7■■□□□ 12.5
LIN28BQ6ZN17 DAP3-213ENST00000471523 576 ntTSL 22.68□□□□□ -1.988e-7■■□□□ 12.5
LIN28BQ6ZN17 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.45□□□□□ -2.188e-7■■□□□ 12.5
LIN28BQ6ZN17 ADAM10-206ENST00000462061 436 ntTSL 33.58□□□□□ -1.841e-6■■□□□ 12.5
LIN28BQ6ZN17 YDJC-205ENST00000468686 1423 ntTSL 1 (best)23.7■■□□□ 1.382e-7■■□□□ 12.5
LIN28BQ6ZN17 YDJC-207ENST00000482998 1388 ntTSL 521.82■■□□□ 1.082e-7■■□□□ 12.5
LIN28BQ6ZN17 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.912e-7■■□□□ 12.5
LIN28BQ6ZN17 YDJC-203ENST00000415762 1410 ntTSL 1 (best)20.61■□□□□ 0.892e-7■■□□□ 12.5
LIN28BQ6ZN17 YDJC-204ENST00000464015 1613 ntTSL 1 (best)20.6■□□□□ 0.892e-7■■□□□ 12.5
LIN28BQ6ZN17 YDJC-206ENST00000473985 1494 ntTSL 520.52■□□□□ 0.882e-7■■□□□ 12.5
LIN28BQ6ZN17 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.8■□□□□ 0.62e-7■■□□□ 12.5
LIN28BQ6ZN17 EIF3M-212ENST00000532444 633 ntTSL 519.39■□□□□ 0.694e-9■■□□□ 12.5
LIN28BQ6ZN17 EIF3M-210ENST00000531921 1697 ntTSL 218.34■□□□□ 0.534e-9■■□□□ 12.5
LIN28BQ6ZN17 EIF3M-201ENST00000323213 889 ntTSL 517.91■□□□□ 0.464e-9■■□□□ 12.5
LIN28BQ6ZN17 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.6■□□□□ 0.254e-9■■□□□ 12.5
LIN28BQ6ZN17 EIF3M-205ENST00000525782 2236 ntTSL 212.85□□□□□ -0.354e-9■■□□□ 12.5
LIN28BQ6ZN17 EIF3M-202ENST00000524711 1645 ntTSL 212.15□□□□□ -0.464e-9■■□□□ 12.5
LIN28BQ6ZN17 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.544e-9■■□□□ 12.5
LIN28BQ6ZN17 EIF3M-207ENST00000530026 769 ntTSL 25.04□□□□□ -1.64e-9■■□□□ 12.5
LIN28BQ6ZN17 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.082e-13■■□□□ 12.5
LIN28BQ6ZN17 CDC42BPA-209ENST00000448940 7355 ntTSL 1 (best)5.85□□□□□ -1.472e-6■■□□□ 12.5
LIN28BQ6ZN17 ERBB2-214ENST00000583038 4930 ntTSL 215.54■□□□□ 0.082e-7■■□□□ 12.5
LIN28BQ6ZN17 ERBB2-203ENST00000445658 3238 ntTSL 2 BASIC12.41□□□□□ -0.422e-7■■□□□ 12.5
LIN28BQ6ZN17 ERBB2-218ENST00000584450 3730 ntTSL 1 (best) BASIC11.76□□□□□ -0.532e-7■■□□□ 12.5
LIN28BQ6ZN17 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.19■■□□□ 1.784e-7■■□□□ 12.5
LIN28BQ6ZN17 ERO1A-204ENST00000554251 555 ntTSL 518.42■□□□□ 0.544e-7■■□□□ 12.5
LIN28BQ6ZN17 ACSM3-213ENST00000568235 558 ntTSL 414.05□□□□□ -0.166e-10■■□□□ 12.5
LIN28BQ6ZN17 ACSM3-205ENST00000561584 561 ntTSL 413.56□□□□□ -0.246e-10■■□□□ 12.5
LIN28BQ6ZN17 CSDE1-212ENST00000529046 571 ntTSL 44.85□□□□□ -1.638e-10■■□□□ 12.5
LIN28BQ6ZN17 CCNI-202ENST00000504697 610 ntTSL 411.92□□□□□ -0.54e-9■■□□□ 12.5
LIN28BQ6ZN17 CCNI-203ENST00000505609 541 ntTSL 47.35□□□□□ -1.234e-9■■□□□ 12.5
LIN28BQ6ZN17 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.365e-7■■□□□ 12.5
LIN28BQ6ZN17 CEP57-208ENST00000538095 590 ntTSL 417.68■□□□□ 0.422e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-214ENST00000541365 870 ntTSL 317.21■□□□□ 0.352e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-216ENST00000544522 851 ntTSL 216.96■□□□□ 0.312e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-204ENST00000535497 446 ntTSL 316.05■□□□□ 0.162e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-211ENST00000539855 1739 ntTSL 515.9■□□□□ 0.142e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-212ENST00000540830 1936 ntTSL 1 (best)13.98□□□□□ -0.172e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-210ENST00000538658 2084 ntTSL 1 (best) BASIC13.41□□□□□ -0.262e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-202ENST00000325542 3178 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.882e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-201ENST00000325486 3098 ntTSL 1 (best) BASIC9.47□□□□□ -0.892e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.152e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-205ENST00000536587 447 ntTSL 54.46□□□□□ -1.72e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-215ENST00000541768 503 ntTSL 23.8□□□□□ -1.82e-6■■□□□ 12.5
LIN28BQ6ZN17 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.092e-6■■□□□ 12.5
LIN28BQ6ZN17 FXR1-212ENST00000476672 976 ntTSL 27.52□□□□□ -1.211e-7■■□□□ 12.5
LIN28BQ6ZN17 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.895e-7■■□□□ 12.5
LIN28BQ6ZN17 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.465e-7■■□□□ 12.5
LIN28BQ6ZN17 YWHAZ-207ENST00000395958 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.545e-7■■□□□ 12.5
LIN28BQ6ZN17 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.815e-7■■□□□ 12.5
LIN28BQ6ZN17 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.855e-7■■□□□ 12.5
LIN28BQ6ZN17 GLDC-203ENST00000463305 652 ntTSL 315.2■□□□□ 0.021e-10■■□□□ 12.5
LIN28BQ6ZN17 GLDC-215ENST00000639493 553 ntTSL 311.72□□□□□ -0.531e-10■■□□□ 12.5
LIN28BQ6ZN17 GLDC-207ENST00000638654 626 ntTSL 310.1□□□□□ -0.791e-10■■□□□ 12.5
LIN28BQ6ZN17 GLDC-221ENST00000640592 2828 ntTSL 58□□□□□ -1.131e-10■■□□□ 12.5
LIN28BQ6ZN17 ADNP-203ENST00000396029 6261 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.718e-8■■□□□ 12.5
LIN28BQ6ZN17 ADNP-204ENST00000396032 4581 ntAPPRIS P1 TSL 2 BASIC9.95□□□□□ -0.828e-8■■□□□ 12.5
LIN28BQ6ZN17 ADNP-206ENST00000621696 6224 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.898e-8■■□□□ 12.5
LIN28BQ6ZN17 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.448e-8■■□□□ 12.5
LIN28BQ6ZN17 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.648e-8■■□□□ 12.5
LIN28BQ6ZN17 SURF4-201ENST00000371982 553 ntTSL 317.21■□□□□ 0.351e-6■■□□□ 12.5
LIN28BQ6ZN17 SURF4-203ENST00000371991 715 ntTSL 3 BASIC15.4■□□□□ 0.061e-6■■□□□ 12.5
LIN28BQ6ZN17 SURF4-205ENST00000467910 693 ntTSL 514.86□□□□□ -0.031e-6■■□□□ 12.5
LIN28BQ6ZN17 LMAN1-204ENST00000587940 442 ntTSL 23.06□□□□□ -1.924e-8■■□□□ 12.4
LIN28BQ6ZN17 EPRS-205ENST00000485821 598 ntTSL 35.87□□□□□ -1.473e-9■■□□□ 12.4
LIN28BQ6ZN17 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.21■□□□□ 0.351e-9■■□□□ 12.4
LIN28BQ6ZN17 SLC1A4-204ENST00000493121 766 ntTSL 516.96■□□□□ 0.311e-9■■□□□ 12.4
LIN28BQ6ZN17 SLC1A4-202ENST00000471551 461 ntTSL 413.66□□□□□ -0.221e-9■■□□□ 12.4
LIN28BQ6ZN17 PSMD2-211ENST00000466987 530 ntTSL 211.54□□□□□ -0.563e-6■■□□□ 12.4
LIN28BQ6ZN17 HECTD1-214ENST00000556281 684 ntTSL 1 (best)5.34□□□□□ -1.551e-9■■□□□ 12.4
LIN28BQ6ZN17 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.3□□□□□ -1.883e-10■■□□□ 12.4
LIN28BQ6ZN17 RPL9P9-202ENST00000466501 579 ntBASIC2.68□□□□□ -1.983e-10■■□□□ 12.4
LIN28BQ6ZN17 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.241e-7■■□□□ 12.4
LIN28BQ6ZN17 FGFR1OP-207ENST00000622353 3451 ntTSL 2 BASIC11.88□□□□□ -0.511e-7■■□□□ 12.4
LIN28BQ6ZN17 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC6.91□□□□□ -1.31e-7■■□□□ 12.4
LIN28BQ6ZN17 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5□□□□□ -1.611e-7■■□□□ 12.4
LIN28BQ6ZN17 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.127e-46■■□□□ 12.4
LIN28BQ6ZN17 RPS10-203ENST00000464218 615 ntTSL 513.96□□□□□ -0.177e-46■■□□□ 12.4
LIN28BQ6ZN17 RPS10-206ENST00000494077 781 ntTSL 213.1□□□□□ -0.317e-46■■□□□ 12.4
LIN28BQ6ZN17 RPS10-204ENST00000467531 777 ntTSL 212.2□□□□□ -0.467e-46■■□□□ 12.4
LIN28BQ6ZN17 RPS10-201ENST00000326199 644 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.537e-46■■□□□ 12.4
LIN28BQ6ZN17 RPS10-202ENST00000344700 650 ntTSL 3 BASIC11.62□□□□□ -0.557e-46■■□□□ 12.4
LIN28BQ6ZN17 RPS10-NUDT3-203ENST00000639877 2911 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.686e-26■■□□□ 12.4
LIN28BQ6ZN17 RPS10-NUDT3-202ENST00000639725 4782 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.886e-26■■□□□ 12.4
LIN28BQ6ZN17 RPS10-NUDT3-201ENST00000605528 595 ntTSL 57.58□□□□□ -1.26e-26■■□□□ 12.4
LIN28BQ6ZN17 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.361e-11■■□□□ 12.4
LIN28BQ6ZN17 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.271e-11■■□□□ 12.4
LIN28BQ6ZN17 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.91■■□□□ 1.261e-11■■□□□ 12.4
LIN28BQ6ZN17 GNB1-207ENST00000472614 708 ntTSL 225.23■■□□□ 1.634e-12■■□□□ 12.4
LIN28BQ6ZN17 GNB1-202ENST00000434686 684 ntTSL 312.42□□□□□ -0.424e-12■■□□□ 12.4
LIN28BQ6ZN17 GNB1-204ENST00000439272 602 ntTSL 510.6□□□□□ -0.714e-12■■□□□ 12.4
LIN28BQ6ZN17 GNB1-208ENST00000607589 567 nt5.95□□□□□ -1.464e-12■■□□□ 12.4
LIN28BQ6ZN17 GNB1-203ENST00000437146 423 ntTSL 34.77□□□□□ -1.654e-12■■□□□ 12.4
LIN28BQ6ZN17 EIF3D-207ENST00000457241 729 ntTSL 216.69■□□□□ 0.263e-8■■□□□ 12.4
Retrieved 100 of 21,972 protein–RNA pairs in 299.9 ms