Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 MRPS34-203ENST00000569585 713 ntTSL 215.43■□□□□ 0.065e-7■■□□□ 12.9
LIN28BQ6ZN17 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.055e-7■■□□□ 12.9
LIN28BQ6ZN17 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.064e-6■■□□□ 12.9
LIN28BQ6ZN17 TADA3-205ENST00000492103 1868 ntTSL 213.66□□□□□ -0.225e-7■■□□□ 12.9
LIN28BQ6ZN17 MYL4-208ENST00000572316 850 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.234e-6■■□□□ 12.9
LIN28BQ6ZN17 PHKB-202ENST00000323584 4283 ntTSL 1 (best) BASIC12.17□□□□□ -0.465e-7■■□□□ 12.9
LIN28BQ6ZN17 MYL4-201ENST00000354968 907 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.474e-6■■□□□ 12.9
LIN28BQ6ZN17 MYL4-206ENST00000571981 920 ntTSL 312.09□□□□□ -0.474e-6■■□□□ 12.9
LIN28BQ6ZN17 PHKB-208ENST00000566044 3829 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.485e-7■■□□□ 12.9
LIN28BQ6ZN17 PIN4-206ENST00000446576 776 ntTSL 310.36□□□□□ -0.755e-7■■□□□ 12.9
LIN28BQ6ZN17 PHKB-204ENST00000564711 697 ntTSL 58.15□□□□□ -1.15e-7■■□□□ 12.9
LIN28BQ6ZN17 NARF-212ENST00000579083 561 ntTSL 47.43□□□□□ -1.224e-6■■□□□ 12.9
LIN28BQ6ZN17 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC7.08□□□□□ -1.285e-7■■□□□ 12.9
LIN28BQ6ZN17 PHKB-210ENST00000566319 3080 ntTSL 26.2□□□□□ -1.425e-7■■□□□ 12.9
LIN28BQ6ZN17 TM9SF3-206ENST00000490192 884 ntTSL 45.6□□□□□ -1.513e-7■■□□□ 12.9
LIN28BQ6ZN17 GNL3-212ENST00000497356 523 ntTSL 24.99□□□□□ -1.615e-7■■□□□ 12.9
LIN28BQ6ZN17 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.31■□□□□ 0.842e-10■■□□□ 12.9
LIN28BQ6ZN17 NONO-213ENST00000486613 555 ntTSL 24.34□□□□□ -1.712e-6■■□□□ 12.9
LIN28BQ6ZN17 GANAB-203ENST00000524437 671 ntTSL 221.95■■□□□ 1.12e-7■■□□□ 12.9
LIN28BQ6ZN17 GANAB-206ENST00000526392 257 ntTSL 318.94■□□□□ 0.622e-7■■□□□ 12.9
LIN28BQ6ZN17 GANAB-214ENST00000534613 737 ntTSL 518.49■□□□□ 0.553e-7■■□□□ 12.9
LIN28BQ6ZN17 GANAB-204ENST00000525994 390 ntTSL 417.4■□□□□ 0.382e-7■■□□□ 12.9
LIN28BQ6ZN17 GANAB-205ENST00000526210 533 ntTSL 417.01■□□□□ 0.312e-7■■□□□ 12.9
LIN28BQ6ZN17 GANAB-212ENST00000534419 640 ntTSL 413.64□□□□□ -0.232e-7■■□□□ 12.9
LIN28BQ6ZN17 GANAB-209ENST00000529737 577 ntTSL 412.9□□□□□ -0.342e-7■■□□□ 12.9
LIN28BQ6ZN17 GANAB-213ENST00000534422 702 ntTSL 512.78□□□□□ -0.363e-7■■□□□ 12.9
LIN28BQ6ZN17 CASC19-272ENST00000641991 1360 nt12.19□□□□□ -0.463e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-229ENST00000641418 1373 ntBASIC12.02□□□□□ -0.493e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-247ENST00000641642 1107 nt11.14□□□□□ -0.633e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-235ENST00000641496 1154 nt10.95□□□□□ -0.663e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-263ENST00000641880 1404 nt9.73□□□□□ -0.853e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-273ENST00000642010 925 nt9.62□□□□□ -0.873e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-254ENST00000641719 1443 nt9.22□□□□□ -0.933e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-214ENST00000641171 1493 nt9.03□□□□□ -0.963e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-252ENST00000641704 1313 nt8.66□□□□□ -1.023e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-216ENST00000641179 1140 nt8.53□□□□□ -1.043e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-266ENST00000641934 1050 nt8.44□□□□□ -1.063e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-211ENST00000641106 1184 nt8.21□□□□□ -1.13e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-257ENST00000641786 816 nt8.07□□□□□ -1.123e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-207ENST00000641029 1047 nt7.66□□□□□ -1.183e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-239ENST00000641547 915 nt7.64□□□□□ -1.193e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-224ENST00000641362 1146 nt7.64□□□□□ -1.193e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-276ENST00000642077 993 nt7.64□□□□□ -1.193e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-220ENST00000641298 974 nt7.64□□□□□ -1.193e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-274ENST00000642018 970 ntBASIC7.45□□□□□ -1.223e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-212ENST00000641153 1287 ntBASIC7.44□□□□□ -1.223e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-283ENST00000642134 870 nt7.25□□□□□ -1.253e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-249ENST00000641681 871 nt7.03□□□□□ -1.283e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-228ENST00000641414 1684 ntBASIC6.89□□□□□ -1.313e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-238ENST00000641523 1558 ntBASIC6.88□□□□□ -1.313e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-248ENST00000641674 1356 ntBASIC6.35□□□□□ -1.393e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-233ENST00000641487 966 nt6.32□□□□□ -1.43e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-264ENST00000641912 1184 ntBASIC6.32□□□□□ -1.43e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-222ENST00000641321 1173 ntBASIC6.29□□□□□ -1.43e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-221ENST00000641309 1382 ntBASIC5.84□□□□□ -1.473e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-260ENST00000641828 2001 ntBASIC5.22□□□□□ -1.573e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-215ENST00000641174 959 nt5.19□□□□□ -1.583e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.18□□□□□ -1.583e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-225ENST00000641365 2219 nt5.12□□□□□ -1.593e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-255ENST00000641733 1385 ntBASIC5.01□□□□□ -1.613e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-262ENST00000641867 866 nt4.86□□□□□ -1.633e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-204ENST00000641001 2055 ntBASIC4.48□□□□□ -1.693e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-284ENST00000642142 1868 ntBASIC4.34□□□□□ -1.713e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-209ENST00000641060 679 nt3.29□□□□□ -1.883e-6■■□□□ 12.9
LIN28BQ6ZN17 CASC19-217ENST00000641187 875 nt2.99□□□□□ -1.933e-6■■□□□ 12.9
LIN28BQ6ZN17 LRP1-207ENST00000554174 2175 ntTSL 1 (best) BASIC12.19□□□□□ -0.463e-12■■□□□ 12.9
LIN28BQ6ZN17 USMG5-202ENST00000337003 560 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.35e-7■■□□□ 12.9
LIN28BQ6ZN17 USMG5-204ENST00000369815 626 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.495e-7■■□□□ 12.9
LIN28BQ6ZN17 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.375e-7■■□□□ 12.9
LIN28BQ6ZN17 SLC25A3-209ENST00000548046 550 ntTSL 416.21■□□□□ 0.196e-13■■□□□ 12.9
LIN28BQ6ZN17 SLC25A3-213ENST00000550695 756 ntTSL 315.85■□□□□ 0.136e-13■■□□□ 12.9
LIN28BQ6ZN17 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC14.82□□□□□ -0.046e-13■■□□□ 12.9
LIN28BQ6ZN17 RPL14-207ENST00000465325 788 ntTSL 39.2□□□□□ -0.941e-39■■□□□ 12.9
LIN28BQ6ZN17 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.12■□□□□ 0.652e-10■■□□□ 12.8
LIN28BQ6ZN17 CSNK1D-224ENST00000584672 401 ntTSL 316.73■□□□□ 0.272e-10■■□□□ 12.8
LIN28BQ6ZN17 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.232e-10■■□□□ 12.8
LIN28BQ6ZN17 CSNK1D-217ENST00000581241 6094 ntTSL 213.47□□□□□ -0.252e-10■■□□□ 12.8
LIN28BQ6ZN17 SMARCC1-205ENST00000483847 804 ntTSL 212.84□□□□□ -0.352e-8■■□□□ 12.8
LIN28BQ6ZN17 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.95■□□□□ 0.38e-7■■□□□ 12.8
LIN28BQ6ZN17 MDM2-219ENST00000493419 577 ntTSL 215.83■□□□□ 0.122e-10■■□□□ 12.8
LIN28BQ6ZN17 AC112178.1-202ENST00000446720 427 ntTSL 35.59□□□□□ -1.512e-10■■□□□ 12.8
LIN28BQ6ZN17 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC4.12□□□□□ -1.752e-10■■□□□ 12.8
LIN28BQ6ZN17 ALB-210ENST00000504043 422 ntTSL 24.16□□□□□ -1.741e-323■■□□□ 12.8
LIN28BQ6ZN17 ALB-206ENST00000484992 693 ntTSL 23.34□□□□□ -1.871e-323■■□□□ 12.8
LIN28BQ6ZN17 FECH-203ENST00000585494 1874 ntTSL 221.69■■□□□ 1.064e-6■■□□□ 12.8
LIN28BQ6ZN17 FECH-210ENST00000592699 1049 ntTSL 320.79■□□□□ 0.924e-6■■□□□ 12.8
LIN28BQ6ZN17 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.054e-6■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.14■■□□□ 1.453e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC22.08■■□□□ 1.133e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.41■■□□□ 1.023e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-224ENST00000581718 574 ntTSL 221.41■■□□□ 1.023e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-228ENST00000584141 564 ntTSL 220.99■□□□□ 0.953e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-203ENST00000472367 794 ntTSL 320.24■□□□□ 0.833e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-212ENST00000483588 688 ntTSL 319.26■□□□□ 0.673e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-229ENST00000584177 574 ntTSL 418.86■□□□□ 0.613e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC15.91■□□□□ 0.143e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC15.91■□□□□ 0.143e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC15.32■□□□□ 0.043e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC15.2■□□□□ 0.023e-23■■□□□ 12.8
LIN28BQ6ZN17 LRRC75A-AS1-215ENST00000491009 863 ntTSL 214.88□□□□□ -0.033e-23■■□□□ 12.8
Retrieved 100 of 21,972 protein–RNA pairs in 352.1 ms