Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC22.07■■□□□ 1.12
SHANK1Q9Y566 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SHANK1Q9Y566 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
SHANK1Q9Y566 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.06■■□□□ 1.12
SHANK1Q9Y566 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC22.06■■□□□ 1.12
SHANK1Q9Y566 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
SHANK1Q9Y566 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22.06■■□□□ 1.12
SHANK1Q9Y566 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
SHANK1Q9Y566 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHANK1Q9Y566 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.06■■□□□ 1.12
SHANK1Q9Y566 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK1Q9Y566 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK1Q9Y566 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.05■■□□□ 1.12
SHANK1Q9Y566 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHANK1Q9Y566 MIR4787-201ENST00000607364 84 ntBASIC22.05■■□□□ 1.12
SHANK1Q9Y566 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHANK1Q9Y566 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHANK1Q9Y566 UNC93B8-201ENST00000511903 705 ntBASIC22.04■■□□□ 1.12
SHANK1Q9Y566 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.04■■□□□ 1.12
SHANK1Q9Y566 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHANK1Q9Y566 MIR638-201ENST00000385237 100 ntBASIC22.04■■□□□ 1.12
SHANK1Q9Y566 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC22.03■■□□□ 1.12
SHANK1Q9Y566 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
SHANK1Q9Y566 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
SHANK1Q9Y566 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHANK1Q9Y566 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHANK1Q9Y566 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
SHANK1Q9Y566 WHAMMP3-201ENST00000611636 1609 ntBASIC22.03■■□□□ 1.12
SHANK1Q9Y566 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHANK1Q9Y566 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SHANK1Q9Y566 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHANK1Q9Y566 KRT16P3-201ENST00000439127 1283 ntBASIC22.02■■□□□ 1.12
SHANK1Q9Y566 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.02■■□□□ 1.12
SHANK1Q9Y566 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC22.02■■□□□ 1.12
SHANK1Q9Y566 BX664725.1-201ENST00000438252 379 ntBASIC22.02■■□□□ 1.12
SHANK1Q9Y566 AC131281.2-201ENST00000520478 145 ntBASIC22.02■■□□□ 1.12
SHANK1Q9Y566 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHANK1Q9Y566 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHANK1Q9Y566 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHANK1Q9Y566 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
SHANK1Q9Y566 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SHANK1Q9Y566 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
SHANK1Q9Y566 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC22.01■■□□□ 1.11
SHANK1Q9Y566 KRT125P-201ENST00000546827 989 ntBASIC22.01■■□□□ 1.11
SHANK1Q9Y566 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SHANK1Q9Y566 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SHANK1Q9Y566 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22■■□□□ 1.11
SHANK1Q9Y566 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SHANK1Q9Y566 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC22■■□□□ 1.11
SHANK1Q9Y566 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SHANK1Q9Y566 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC22■■□□□ 1.11
SHANK1Q9Y566 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22■■□□□ 1.11
SHANK1Q9Y566 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SHANK1Q9Y566 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC22■■□□□ 1.11
SHANK1Q9Y566 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SHANK1Q9Y566 RPS2P7-201ENST00000447334 885 ntBASIC21.99■■□□□ 1.11
SHANK1Q9Y566 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.99■■□□□ 1.11
SHANK1Q9Y566 AL139393.2-201ENST00000608721 2025 ntBASIC21.99■■□□□ 1.11
SHANK1Q9Y566 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SHANK1Q9Y566 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
SHANK1Q9Y566 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.99■■□□□ 1.11
SHANK1Q9Y566 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
SHANK1Q9Y566 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
SHANK1Q9Y566 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.98■■□□□ 1.11
SHANK1Q9Y566 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK1Q9Y566 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK1Q9Y566 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.98■■□□□ 1.11
SHANK1Q9Y566 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SHANK1Q9Y566 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK1Q9Y566 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.97■■□□□ 1.11
SHANK1Q9Y566 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SHANK1Q9Y566 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.97■■□□□ 1.11
SHANK1Q9Y566 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.97■■□□□ 1.11
SHANK1Q9Y566 AC022616.5-201ENST00000518796 181 ntBASIC21.97■■□□□ 1.11
SHANK1Q9Y566 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.96■■□□□ 1.11
SHANK1Q9Y566 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
SHANK1Q9Y566 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
SHANK1Q9Y566 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.96■■□□□ 1.11
SHANK1Q9Y566 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SHANK1Q9Y566 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.96■■□□□ 1.11
SHANK1Q9Y566 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
SHANK1Q9Y566 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK1Q9Y566 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK1Q9Y566 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK1Q9Y566 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK1Q9Y566 LONRF2P2-201ENST00000439212 571 ntBASIC21.95■■□□□ 1.1
SHANK1Q9Y566 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SHANK1Q9Y566 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
SHANK1Q9Y566 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK1Q9Y566 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.94■■□□□ 1.1
SHANK1Q9Y566 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.94■■□□□ 1.1
SHANK1Q9Y566 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.94■■□□□ 1.1
SHANK1Q9Y566 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SHANK1Q9Y566 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.93■■□□□ 1.1
SHANK1Q9Y566 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK1Q9Y566 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK1Q9Y566 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
SHANK1Q9Y566 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK1Q9Y566 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK1Q9Y566 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms