Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HSPG2P98160 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HSPG2P98160 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC15.57■□□□□ 0.08
HSPG2P98160 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC15.57■□□□□ 0.08
HSPG2P98160 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HSPG2P98160 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HSPG2P98160 EBPL-204ENST00000378272 766 ntTSL 3 BASIC15.56■□□□□ 0.08
HSPG2P98160 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HSPG2P98160 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HSPG2P98160 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HSPG2P98160 RPP21-222ENST00000433076 577 ntTSL 2 BASIC15.55■□□□□ 0.08
HSPG2P98160 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC15.55■□□□□ 0.08
HSPG2P98160 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HSPG2P98160 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HSPG2P98160 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HSPG2P98160 TRIR-202ENST00000588213 841 ntTSL 3 BASIC15.55■□□□□ 0.08
HSPG2P98160 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HSPG2P98160 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
HSPG2P98160 AL031432.3-201ENST00000607698 485 ntBASIC15.54■□□□□ 0.08
HSPG2P98160 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HSPG2P98160 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC15.54■□□□□ 0.08
HSPG2P98160 MIR4466-201ENST00000606121 54 ntBASIC15.54■□□□□ 0.08
HSPG2P98160 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC15.53■□□□□ 0.08
HSPG2P98160 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC15.53■□□□□ 0.08
HSPG2P98160 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC15.53■□□□□ 0.08
HSPG2P98160 SRR-208ENST00000576848 588 ntTSL 4 BASIC15.53■□□□□ 0.08
HSPG2P98160 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HSPG2P98160 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HSPG2P98160 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HSPG2P98160 AL512631.2-201ENST00000604634 923 ntBASIC15.52■□□□□ 0.08
HSPG2P98160 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HSPG2P98160 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HSPG2P98160 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
HSPG2P98160 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC15.52■□□□□ 0.07
HSPG2P98160 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HSPG2P98160 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
HSPG2P98160 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC15.52■□□□□ 0.07
HSPG2P98160 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC15.52■□□□□ 0.07
HSPG2P98160 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC15.51■□□□□ 0.07
HSPG2P98160 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HSPG2P98160 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HSPG2P98160 AC100797.4-201ENST00000631653 1827 ntBASIC15.5■□□□□ 0.07
HSPG2P98160 BX664725.1-201ENST00000438252 379 ntBASIC15.5■□□□□ 0.07
HSPG2P98160 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC15.5■□□□□ 0.07
HSPG2P98160 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HSPG2P98160 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HSPG2P98160 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HSPG2P98160 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC15.5■□□□□ 0.07
HSPG2P98160 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
HSPG2P98160 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC15.5■□□□□ 0.07
HSPG2P98160 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HSPG2P98160 MIR3621-201ENST00000580529 85 ntBASIC15.5■□□□□ 0.07
HSPG2P98160 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
HSPG2P98160 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HSPG2P98160 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HSPG2P98160 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HSPG2P98160 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HSPG2P98160 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HSPG2P98160 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC15.49■□□□□ 0.07
HSPG2P98160 AC022616.5-201ENST00000518796 181 ntBASIC15.48■□□□□ 0.07
HSPG2P98160 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC15.48■□□□□ 0.07
HSPG2P98160 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC15.48■□□□□ 0.07
HSPG2P98160 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC15.48■□□□□ 0.07
HSPG2P98160 AC092028.1-203ENST00000608262 953 ntBASIC15.48■□□□□ 0.07
HSPG2P98160 TK2-202ENST00000417693 1046 ntTSL 2 BASIC15.48■□□□□ 0.07
HSPG2P98160 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC15.48■□□□□ 0.07
HSPG2P98160 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC15.48■□□□□ 0.07
HSPG2P98160 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HSPG2P98160 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HSPG2P98160 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
HSPG2P98160 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC15.47■□□□□ 0.07
HSPG2P98160 AC021242.3-201ENST00000607598 1377 ntBASIC15.47■□□□□ 0.07
HSPG2P98160 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HSPG2P98160 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC15.47■□□□□ 0.07
HSPG2P98160 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC15.47■□□□□ 0.07
HSPG2P98160 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC15.47■□□□□ 0.07
HSPG2P98160 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
HSPG2P98160 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
HSPG2P98160 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HSPG2P98160 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC15.47■□□□□ 0.07
HSPG2P98160 AC137630.3-201ENST00000607245 391 ntBASIC15.46■□□□□ 0.07
HSPG2P98160 AL162430.1-201ENST00000480705 870 ntBASIC15.46■□□□□ 0.07
HSPG2P98160 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HSPG2P98160 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HSPG2P98160 RPS2P7-201ENST00000447334 885 ntBASIC15.46■□□□□ 0.07
HSPG2P98160 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
HSPG2P98160 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
HSPG2P98160 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC15.45■□□□□ 0.06
HSPG2P98160 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC15.45■□□□□ 0.06
HSPG2P98160 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HSPG2P98160 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
HSPG2P98160 TSPY9P-201ENST00000440215 945 ntBASIC15.45■□□□□ 0.06
HSPG2P98160 TSPY11P-201ENST00000442607 1045 ntBASIC15.45■□□□□ 0.06
HSPG2P98160 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC15.45■□□□□ 0.06
HSPG2P98160 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HSPG2P98160 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HSPG2P98160 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC15.45■□□□□ 0.06
HSPG2P98160 SUDS3P1-201ENST00000505831 966 ntBASIC15.45■□□□□ 0.06
HSPG2P98160 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HSPG2P98160 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms