Protein–RNA interactions for Protein: Q9XRX5

HHLA3, HERV-H LTR-associating protein 3, humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HHLA3Q9XRX5 LINC01003-201ENST00000564834 1764 ntBASIC17.96■□□□□ 0.47
HHLA3Q9XRX5 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HHLA3Q9XRX5 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HHLA3Q9XRX5 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC17.96■□□□□ 0.47
HHLA3Q9XRX5 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HHLA3Q9XRX5 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
HHLA3Q9XRX5 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
HHLA3Q9XRX5 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HHLA3Q9XRX5 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC17.95■□□□□ 0.46
HHLA3Q9XRX5 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HHLA3Q9XRX5 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HHLA3Q9XRX5 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HHLA3Q9XRX5 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HHLA3Q9XRX5 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HHLA3Q9XRX5 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC17.94■□□□□ 0.46
HHLA3Q9XRX5 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HHLA3Q9XRX5 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HHLA3Q9XRX5 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HHLA3Q9XRX5 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC17.94■□□□□ 0.46
HHLA3Q9XRX5 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HHLA3Q9XRX5 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC17.93■□□□□ 0.46
HHLA3Q9XRX5 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HHLA3Q9XRX5 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HHLA3Q9XRX5 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HHLA3Q9XRX5 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
HHLA3Q9XRX5 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HHLA3Q9XRX5 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HHLA3Q9XRX5 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HHLA3Q9XRX5 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HHLA3Q9XRX5 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HHLA3Q9XRX5 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HHLA3Q9XRX5 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
HHLA3Q9XRX5 AC145676.1-201ENST00000514988 2004 ntBASIC17.91■□□□□ 0.46
HHLA3Q9XRX5 AP002414.2-202ENST00000590929 1450 ntBASIC17.91■□□□□ 0.46
HHLA3Q9XRX5 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC17.91■□□□□ 0.46
HHLA3Q9XRX5 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HHLA3Q9XRX5 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HHLA3Q9XRX5 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HHLA3Q9XRX5 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HHLA3Q9XRX5 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HHLA3Q9XRX5 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC17.9■□□□□ 0.46
HHLA3Q9XRX5 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HHLA3Q9XRX5 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
HHLA3Q9XRX5 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HHLA3Q9XRX5 ZNRF2P2-203ENST00000454624 420 ntBASIC17.89■□□□□ 0.45
HHLA3Q9XRX5 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC17.89■□□□□ 0.45
HHLA3Q9XRX5 LINC01971-201ENST00000617888 1048 ntBASIC17.89■□□□□ 0.45
HHLA3Q9XRX5 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HHLA3Q9XRX5 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HHLA3Q9XRX5 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HHLA3Q9XRX5 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HHLA3Q9XRX5 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HHLA3Q9XRX5 ABHD17AP4-201ENST00000411545 909 ntBASIC17.88■□□□□ 0.45
HHLA3Q9XRX5 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HHLA3Q9XRX5 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC17.88■□□□□ 0.45
HHLA3Q9XRX5 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HHLA3Q9XRX5 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC17.87■□□□□ 0.45
HHLA3Q9XRX5 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HHLA3Q9XRX5 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HHLA3Q9XRX5 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HHLA3Q9XRX5 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HHLA3Q9XRX5 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 RARA-203ENST00000394086 2008 ntTSL 2 BASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 AC110285.7-201ENST00000624417 1536 ntBASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HHLA3Q9XRX5 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HHLA3Q9XRX5 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HHLA3Q9XRX5 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HHLA3Q9XRX5 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC17.85■□□□□ 0.45
HHLA3Q9XRX5 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HHLA3Q9XRX5 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC17.85■□□□□ 0.45
HHLA3Q9XRX5 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC17.85■□□□□ 0.45
HHLA3Q9XRX5 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HHLA3Q9XRX5 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
HHLA3Q9XRX5 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
HHLA3Q9XRX5 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
HHLA3Q9XRX5 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC17.84■□□□□ 0.45
HHLA3Q9XRX5 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC17.84■□□□□ 0.45
HHLA3Q9XRX5 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
HHLA3Q9XRX5 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HHLA3Q9XRX5 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC17.83■□□□□ 0.45
HHLA3Q9XRX5 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC17.83■□□□□ 0.44
HHLA3Q9XRX5 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC17.83■□□□□ 0.44
HHLA3Q9XRX5 CHML-204ENST00000638121 920 ntTSL 2 BASIC17.83■□□□□ 0.44
HHLA3Q9XRX5 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HHLA3Q9XRX5 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
HHLA3Q9XRX5 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HHLA3Q9XRX5 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HHLA3Q9XRX5 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC17.82■□□□□ 0.44
HHLA3Q9XRX5 DUX4L11-201ENST00000611504 1267 ntBASIC17.82■□□□□ 0.44
HHLA3Q9XRX5 DUX4L12-201ENST00000614593 1267 ntBASIC17.82■□□□□ 0.44
HHLA3Q9XRX5 DUX4L14-201ENST00000621227 1267 ntBASIC17.82■□□□□ 0.44
HHLA3Q9XRX5 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 141.6 ms