Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
USF1P22415 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USF1P22415 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.88■□□□□ 0.93
USF1P22415 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USF1P22415 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USF1P22415 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.88■□□□□ 0.93
USF1P22415 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
USF1P22415 AC129492.7-201ENST00000622992 756 ntBASIC20.87■□□□□ 0.93
USF1P22415 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
USF1P22415 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USF1P22415 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.86■□□□□ 0.93
USF1P22415 AC009831.1-201ENST00000580420 1582 ntBASIC20.86■□□□□ 0.93
USF1P22415 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.86■□□□□ 0.93
USF1P22415 RARRES2P1-201ENST00000474487 481 ntBASIC20.86■□□□□ 0.93
USF1P22415 AL592293.1-201ENST00000502889 1188 ntBASIC20.86■□□□□ 0.93
USF1P22415 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USF1P22415 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
USF1P22415 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USF1P22415 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USF1P22415 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USF1P22415 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
USF1P22415 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.85■□□□□ 0.93
USF1P22415 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.85■□□□□ 0.93
USF1P22415 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USF1P22415 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.84■□□□□ 0.93
USF1P22415 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
USF1P22415 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USF1P22415 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USF1P22415 DUX4L18-201ENST00000553347 1267 ntBASIC20.84■□□□□ 0.93
USF1P22415 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
USF1P22415 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USF1P22415 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
USF1P22415 AC142086.6-201ENST00000621154 1765 ntBASIC20.83■□□□□ 0.93
USF1P22415 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
USF1P22415 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.82■□□□□ 0.92
USF1P22415 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USF1P22415 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
USF1P22415 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.82■□□□□ 0.92
USF1P22415 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
USF1P22415 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.82■□□□□ 0.92
USF1P22415 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
USF1P22415 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USF1P22415 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USF1P22415 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.81■□□□□ 0.92
USF1P22415 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USF1P22415 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.81■□□□□ 0.92
USF1P22415 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USF1P22415 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.81■□□□□ 0.92
USF1P22415 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.81■□□□□ 0.92
USF1P22415 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USF1P22415 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USF1P22415 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USF1P22415 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USF1P22415 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.8■□□□□ 0.92
USF1P22415 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USF1P22415 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
USF1P22415 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.8■□□□□ 0.92
USF1P22415 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.8■□□□□ 0.92
USF1P22415 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USF1P22415 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.79■□□□□ 0.92
USF1P22415 AC026202.3-201ENST00000600805 1127 ntBASIC20.79■□□□□ 0.92
USF1P22415 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
USF1P22415 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
USF1P22415 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USF1P22415 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USF1P22415 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USF1P22415 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USF1P22415 AC025884.2-201ENST00000553429 711 ntBASIC20.78■□□□□ 0.92
USF1P22415 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USF1P22415 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USF1P22415 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USF1P22415 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USF1P22415 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.77■□□□□ 0.92
USF1P22415 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USF1P22415 RP9P-202ENST00000450133 1212 ntBASIC20.77■□□□□ 0.92
USF1P22415 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.77■□□□□ 0.92
USF1P22415 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USF1P22415 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USF1P22415 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.91
USF1P22415 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USF1P22415 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USF1P22415 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.76■□□□□ 0.91
USF1P22415 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.76■□□□□ 0.91
USF1P22415 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.76■□□□□ 0.91
USF1P22415 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
USF1P22415 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
USF1P22415 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
USF1P22415 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USF1P22415 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USF1P22415 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.75■□□□□ 0.91
USF1P22415 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USF1P22415 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USF1P22415 DRD5P2-201ENST00000421395 2012 ntBASIC20.74■□□□□ 0.91
USF1P22415 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms