Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL6A5A8TX70 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.85■□□□□ 0.77
COL6A5A8TX70 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A5A8TX70 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A5A8TX70 MIR4787-201ENST00000607364 84 ntBASIC19.84■□□□□ 0.77
COL6A5A8TX70 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A5A8TX70 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL6A5A8TX70 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL6A5A8TX70 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
COL6A5A8TX70 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL6A5A8TX70 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL6A5A8TX70 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.83■□□□□ 0.76
COL6A5A8TX70 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC19.82■□□□□ 0.76
COL6A5A8TX70 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
COL6A5A8TX70 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC19.82■□□□□ 0.76
COL6A5A8TX70 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.82■□□□□ 0.76
COL6A5A8TX70 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.82■□□□□ 0.76
COL6A5A8TX70 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A5A8TX70 ZNRF2P3-201ENST00000424200 374 ntBASIC19.81■□□□□ 0.76
COL6A5A8TX70 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.81■□□□□ 0.76
COL6A5A8TX70 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A5A8TX70 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.81■□□□□ 0.76
COL6A5A8TX70 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A5A8TX70 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A5A8TX70 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A5A8TX70 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
COL6A5A8TX70 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A5A8TX70 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A5A8TX70 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A5A8TX70 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A5A8TX70 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A5A8TX70 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A5A8TX70 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A5A8TX70 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A5A8TX70 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A5A8TX70 AL359258.2-201ENST00000564063 1566 ntBASIC19.79■□□□□ 0.76
COL6A5A8TX70 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.79■□□□□ 0.76
COL6A5A8TX70 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A5A8TX70 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A5A8TX70 LONRF2P2-201ENST00000439212 571 ntBASIC19.79■□□□□ 0.76
COL6A5A8TX70 UNC93B8-201ENST00000511903 705 ntBASIC19.79■□□□□ 0.76
COL6A5A8TX70 AC018755.3-202ENST00000596210 929 ntBASIC19.79■□□□□ 0.76
COL6A5A8TX70 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A5A8TX70 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A5A8TX70 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A5A8TX70 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.78■□□□□ 0.76
COL6A5A8TX70 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A5A8TX70 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A5A8TX70 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.77■□□□□ 0.76
COL6A5A8TX70 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A5A8TX70 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A5A8TX70 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.77■□□□□ 0.76
COL6A5A8TX70 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A5A8TX70 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A5A8TX70 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A5A8TX70 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A5A8TX70 AC133561.4-201ENST00000566112 224 ntBASIC19.76■□□□□ 0.75
COL6A5A8TX70 MIR5787-201ENST00000611784 55 ntBASIC19.76■□□□□ 0.75
COL6A5A8TX70 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A5A8TX70 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A5A8TX70 AL161658.1-201ENST00000623641 1967 ntBASIC19.75■□□□□ 0.75
COL6A5A8TX70 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A5A8TX70 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A5A8TX70 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.75■□□□□ 0.75
COL6A5A8TX70 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A5A8TX70 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A5A8TX70 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.74■□□□□ 0.75
COL6A5A8TX70 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A5A8TX70 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.74■□□□□ 0.75
COL6A5A8TX70 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.74■□□□□ 0.75
COL6A5A8TX70 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
COL6A5A8TX70 AC019171.1-201ENST00000601251 1056 ntBASIC19.74■□□□□ 0.75
COL6A5A8TX70 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A5A8TX70 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
COL6A5A8TX70 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A5A8TX70 KRT16P3-201ENST00000439127 1283 ntBASIC19.73■□□□□ 0.75
COL6A5A8TX70 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
COL6A5A8TX70 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
COL6A5A8TX70 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A5A8TX70 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A5A8TX70 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
COL6A5A8TX70 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.73■□□□□ 0.75
COL6A5A8TX70 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.73■□□□□ 0.75
COL6A5A8TX70 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A5A8TX70 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.72■□□□□ 0.75
COL6A5A8TX70 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.72■□□□□ 0.75
COL6A5A8TX70 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A5A8TX70 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
COL6A5A8TX70 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A5A8TX70 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.72■□□□□ 0.75
COL6A5A8TX70 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.71■□□□□ 0.75
COL6A5A8TX70 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A5A8TX70 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A5A8TX70 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A5A8TX70 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A5A8TX70 BX664725.1-201ENST00000438252 379 ntBASIC19.7■□□□□ 0.74
COL6A5A8TX70 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.7■□□□□ 0.74
COL6A5A8TX70 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.7■□□□□ 0.74
COL6A5A8TX70 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A5A8TX70 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms