Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC38.92■■■■□ 3.82
COL17A1Q9UMD9 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC38.91■■■■□ 3.82
COL17A1Q9UMD9 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC38.91■■■■□ 3.82
COL17A1Q9UMD9 RAP2CP1-202ENST00000605179 643 ntBASIC38.91■■■■□ 3.82
COL17A1Q9UMD9 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC38.9■■■■□ 3.82
COL17A1Q9UMD9 MIR638-201ENST00000385237 100 ntBASIC38.9■■■■□ 3.82
COL17A1Q9UMD9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC38.9■■■■□ 3.82
COL17A1Q9UMD9 SMPD5-203ENST00000639008 1464 ntBASIC38.89■■■■□ 3.82
COL17A1Q9UMD9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC38.88■■■■□ 3.81
COL17A1Q9UMD9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC38.88■■■■□ 3.81
COL17A1Q9UMD9 AC103724.3-201ENST00000564481 992 ntBASIC38.88■■■■□ 3.81
COL17A1Q9UMD9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC38.88■■■■□ 3.81
COL17A1Q9UMD9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC38.87■■■■□ 3.81
COL17A1Q9UMD9 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC38.87■■■■□ 3.81
COL17A1Q9UMD9 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC38.86■■■■□ 3.81
COL17A1Q9UMD9 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC38.86■■■■□ 3.81
COL17A1Q9UMD9 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC38.85■■■■□ 3.81
COL17A1Q9UMD9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC38.84■■■■□ 3.81
COL17A1Q9UMD9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC38.84■■■■□ 3.81
COL17A1Q9UMD9 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC38.84■■■■□ 3.81
COL17A1Q9UMD9 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC38.83■■■■□ 3.81
COL17A1Q9UMD9 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC38.82■■■■□ 3.81
COL17A1Q9UMD9 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC38.81■■■■□ 3.8
COL17A1Q9UMD9 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
COL17A1Q9UMD9 AC008406.3-201ENST00000620001 1374 ntBASIC38.8■■■■□ 3.8
COL17A1Q9UMD9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC38.8■■■■□ 3.8
COL17A1Q9UMD9 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC38.79■■■■□ 3.8
COL17A1Q9UMD9 AC139795.1-202ENST00000500444 432 ntBASIC38.79■■■■□ 3.8
COL17A1Q9UMD9 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC38.79■■■■□ 3.8
COL17A1Q9UMD9 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC38.79■■■■□ 3.8
COL17A1Q9UMD9 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC38.78■■■■□ 3.8
COL17A1Q9UMD9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC38.77■■■■□ 3.8
COL17A1Q9UMD9 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC38.77■■■■□ 3.8
COL17A1Q9UMD9 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC38.76■■■■□ 3.8
COL17A1Q9UMD9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC38.75■■■■□ 3.79
COL17A1Q9UMD9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
COL17A1Q9UMD9 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC38.74■■■■□ 3.79
COL17A1Q9UMD9 AC093536.1-201ENST00000569153 554 ntBASIC38.74■■■■□ 3.79
COL17A1Q9UMD9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC38.74■■■■□ 3.79
COL17A1Q9UMD9 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC38.74■■■■□ 3.79
COL17A1Q9UMD9 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
COL17A1Q9UMD9 AL031848.2-201ENST00000607670 837 ntBASIC38.73■■■■□ 3.79
COL17A1Q9UMD9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC38.73■■■■□ 3.79
COL17A1Q9UMD9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC38.73■■■■□ 3.79
COL17A1Q9UMD9 PEMT-206ENST00000435340 960 ntTSL 5 BASIC38.73■■■■□ 3.79
COL17A1Q9UMD9 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC38.72■■■■□ 3.79
COL17A1Q9UMD9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC38.72■■■■□ 3.79
COL17A1Q9UMD9 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC38.72■■■■□ 3.79
COL17A1Q9UMD9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC38.72■■■■□ 3.79
COL17A1Q9UMD9 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC38.71■■■■□ 3.79
COL17A1Q9UMD9 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC38.7■■■■□ 3.79
COL17A1Q9UMD9 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC38.7■■■■□ 3.79
COL17A1Q9UMD9 IDNK-201ENST00000376417 511 ntTSL 5 BASIC38.7■■■■□ 3.79
COL17A1Q9UMD9 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC38.7■■■■□ 3.79
COL17A1Q9UMD9 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC38.68■■■■□ 3.78
COL17A1Q9UMD9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC38.68■■■■□ 3.78
COL17A1Q9UMD9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC38.67■■■■□ 3.78
COL17A1Q9UMD9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC38.67■■■■□ 3.78
COL17A1Q9UMD9 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC38.67■■■■□ 3.78
COL17A1Q9UMD9 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC38.66■■■■□ 3.78
COL17A1Q9UMD9 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC38.66■■■■□ 3.78
COL17A1Q9UMD9 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC38.65■■■■□ 3.78
COL17A1Q9UMD9 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC38.65■■■■□ 3.78
COL17A1Q9UMD9 CREM-229ENST00000474362 1030 ntTSL 2 BASIC38.65■■■■□ 3.78
COL17A1Q9UMD9 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC38.64■■■■□ 3.78
COL17A1Q9UMD9 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC38.64■■■■□ 3.78
COL17A1Q9UMD9 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC38.64■■■■□ 3.78
COL17A1Q9UMD9 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC38.63■■■■□ 3.78
COL17A1Q9UMD9 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC38.62■■■■□ 3.77
COL17A1Q9UMD9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC38.62■■■■□ 3.77
COL17A1Q9UMD9 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC38.62■■■■□ 3.77
COL17A1Q9UMD9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC38.62■■■■□ 3.77
COL17A1Q9UMD9 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC38.62■■■■□ 3.77
COL17A1Q9UMD9 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC38.61■■■■□ 3.77
COL17A1Q9UMD9 AC239859.2-201ENST00000444165 318 ntBASIC38.61■■■■□ 3.77
COL17A1Q9UMD9 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC38.61■■■■□ 3.77
COL17A1Q9UMD9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC38.6■■■■□ 3.77
COL17A1Q9UMD9 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC38.6■■■■□ 3.77
COL17A1Q9UMD9 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC38.6■■■■□ 3.77
COL17A1Q9UMD9 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC38.6■■■■□ 3.77
COL17A1Q9UMD9 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC38.6■■■■□ 3.77
COL17A1Q9UMD9 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC38.6■■■■□ 3.77
COL17A1Q9UMD9 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC38.59■■■■□ 3.77
COL17A1Q9UMD9 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC38.59■■■■□ 3.77
COL17A1Q9UMD9 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC38.59■■■■□ 3.77
COL17A1Q9UMD9 GRAMD4P7-201ENST00000578182 1232 ntBASIC38.59■■■■□ 3.77
COL17A1Q9UMD9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC38.59■■■■□ 3.77
COL17A1Q9UMD9 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC38.58■■■■□ 3.77
COL17A1Q9UMD9 RNF146-205ENST00000477776 762 ntTSL 3 BASIC38.58■■■■□ 3.77
COL17A1Q9UMD9 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC38.58■■■■□ 3.77
COL17A1Q9UMD9 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC38.57■■■■□ 3.77
COL17A1Q9UMD9 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC38.57■■■■□ 3.76
COL17A1Q9UMD9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC38.56■■■■□ 3.76
COL17A1Q9UMD9 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC38.56■■■■□ 3.76
COL17A1Q9UMD9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC38.56■■■■□ 3.76
COL17A1Q9UMD9 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
COL17A1Q9UMD9 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
COL17A1Q9UMD9 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC38.54■■■■□ 3.76
COL17A1Q9UMD9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC38.54■■■■□ 3.76
COL17A1Q9UMD9 HYI-210ENST00000486909 905 ntTSL 5 BASIC38.54■■■■□ 3.76
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms