Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 DDX27-203ENST00000471144 3639 ntTSL 1 (best)6.4□□□□□ -1.392e-7■□□□□ 11.2
SUB1P53999 LRRC59-202ENST00000503118 438 ntTSL 56.12□□□□□ -1.432e-7■□□□□ 11.2
SUB1P53999 OSBPL9-204ENST00000435274 2670 ntTSL 55.57□□□□□ -1.522e-7■□□□□ 11.2
SUB1P53999 DNAJC9-202ENST00000453189 762 ntTSL 35.03□□□□□ -1.67e-7■□□□□ 11.2
SUB1P53999 CD47-205ENST00000517766 538 ntTSL 24.72□□□□□ -1.652e-7■□□□□ 11.2
SUB1P53999 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.57□□□□□ -1.682e-7■□□□□ 11.2
SUB1P53999 ATP13A3-202ENST00000429136 3729 ntTSL 1 (best)4.52□□□□□ -1.692e-7■□□□□ 11.2
SUB1P53999 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.772e-7■□□□□ 11.2
SUB1P53999 DNAJC9-203ENST00000469143 362 ntTSL 33.83□□□□□ -1.87e-7■□□□□ 11.2
SUB1P53999 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.872e-7■□□□□ 11.2
SUB1P53999 ATP13A3-206ENST00000461660 3517 ntTSL 1 (best)3.39□□□□□ -1.872e-7■□□□□ 11.2
SUB1P53999 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.122e-7■□□□□ 11.2
SUB1P53999 CD47-203ENST00000398258 469 ntTSL 31.8□□□□□ -2.122e-7■□□□□ 11.2
SUB1P53999 GLUL-210ENST00000484996 1369 ntTSL 316.15■□□□□ 0.181e-6■□□□□ 11.2
SUB1P53999 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.063e-8■□□□□ 11.2
SUB1P53999 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.573e-8■□□□□ 11.2
SUB1P53999 PTTG1-201ENST00000352433 753 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.493e-8■□□□□ 11.2
SUB1P53999 PTTG1-204ENST00000519287 670 ntTSL 55.63□□□□□ -1.513e-8■□□□□ 11.2
SUB1P53999 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.081e-6■□□□□ 11.2
SUB1P53999 RPS27A-205ENST00000463185 590 ntTSL 1 (best)15.36■□□□□ 0.053e-25■□□□□ 11.1
SUB1P53999 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.37■□□□□ 0.372e-9■□□□□ 11.1
SUB1P53999 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.07■□□□□ 0.162e-9■□□□□ 11.1
SUB1P53999 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.142e-9■□□□□ 11.1
SUB1P53999 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC13.41□□□□□ -0.262e-9■□□□□ 11.1
SUB1P53999 SEPT8-210ENST00000448933 4270 ntTSL 1 (best) BASIC10.02□□□□□ -0.812e-9■□□□□ 11.1
SUB1P53999 SEPT8-213ENST00000481030 790 ntTSL 38.05□□□□□ -1.122e-9■□□□□ 11.1
SUB1P53999 TMEM59-201ENST00000234831 6691 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.681e-12■□□□□ 11.1
SUB1P53999 TMEM59-204ENST00000371344 2473 ntTSL 2 BASIC5.74□□□□□ -1.491e-12■□□□□ 11.1
SUB1P53999 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.23□□□□□ -2.051e-12■□□□□ 11.1
SUB1P53999 TRIM28-206ENST00000595974 665 ntTSL 312.24□□□□□ -0.453e-15■□□□□ 11.1
SUB1P53999 TRIM28-214ENST00000600840 338 ntTSL 26.68□□□□□ -1.343e-15■□□□□ 11.1
SUB1P53999 EIF4A2-209ENST00000461021 575 ntTSL 23.45□□□□□ -1.865e-12■□□□□ 11.1
SUB1P53999 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.365e-8■□□□□ 11.1
SUB1P53999 DPP7-210ENST00000483783 958 ntTSL 215.99■□□□□ 0.155e-8■□□□□ 11.1
SUB1P53999 DPP7-206ENST00000473532 1144 ntTSL 513.45□□□□□ -0.265e-8■□□□□ 11.1
SUB1P53999 DPP7-203ENST00000463619 775 ntTSL 310.85□□□□□ -0.675e-8■□□□□ 11.1
SUB1P53999 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.453e-6■□□□□ 11.1
SUB1P53999 HPCAL1-203ENST00000419810 4781 ntTSL 1 (best)11.9□□□□□ -0.516e-11■□□□□ 11.1
SUB1P53999 UBR4-210ENST00000466969 510 ntTSL 28.14□□□□□ -1.111e-8■□□□□ 11
SUB1P53999 EIF2S1-205ENST00000556724 527 ntTSL 26.43□□□□□ -1.383e-6■□□□□ 11
SUB1P53999 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC15.27■□□□□ 0.047e-7■□□□□ 11
SUB1P53999 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.93□□□□□ -0.187e-7■□□□□ 11
SUB1P53999 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13.57□□□□□ -0.247e-7■□□□□ 11
SUB1P53999 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.247e-7■□□□□ 11
SUB1P53999 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.333e-6■□□□□ 11
SUB1P53999 DIP2A-207ENST00000473752 1638 ntTSL 1 (best)12.4□□□□□ -0.427e-7■□□□□ 11
SUB1P53999 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.433e-6■□□□□ 11
SUB1P53999 DIP2A-212ENST00000494435 2063 ntTSL 211.07□□□□□ -0.647e-7■□□□□ 11
SUB1P53999 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.643e-6■□□□□ 11
SUB1P53999 SSBP1-203ENST00000463093 600 ntTSL 510.43□□□□□ -0.743e-6■□□□□ 11
SUB1P53999 SSBP1-206ENST00000467681 630 ntTSL 210.43□□□□□ -0.743e-6■□□□□ 11
SUB1P53999 DIP2A-202ENST00000417564 6967 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.957e-7■□□□□ 11
SUB1P53999 SSBP1-208ENST00000469123 662 ntTSL 56.63□□□□□ -1.353e-6■□□□□ 11
SUB1P53999 SSBP1-212ENST00000489378 1434 ntTSL 26.16□□□□□ -1.423e-6■□□□□ 11
SUB1P53999 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.623e-6■□□□□ 11
SUB1P53999 SSBP1-204ENST00000465167 517 ntTSL 54.28□□□□□ -1.723e-6■□□□□ 11
SUB1P53999 LRRC75A-AS1-218ENST00000578380 310 ntTSL 316.67■□□□□ 0.267e-29■□□□□ 11
SUB1P53999 FLNA-210ENST00000462590 1026 ntTSL 1 (best)10.8□□□□□ -0.681e-6■□□□□ 11
SUB1P53999 ENO1-204ENST00000489867 732 ntTSL 1 (best)12.84□□□□□ -0.356e-34■□□□□ 11
SUB1P53999 ENO1-205ENST00000492343 826 ntTSL 1 (best)6.3□□□□□ -1.46e-34■□□□□ 11
SUB1P53999 ENO1-203ENST00000486051 536 ntTSL 34.89□□□□□ -1.636e-34■□□□□ 11
SUB1P53999 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.073e-6■□□□□ 11
SUB1P53999 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC14.65□□□□□ -0.063e-6■□□□□ 11
SUB1P53999 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.093e-6■□□□□ 11
SUB1P53999 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.173e-6■□□□□ 11
SUB1P53999 FLNA-213ENST00000466325 828 ntTSL 212.18□□□□□ -0.462e-6■□□□□ 11
SUB1P53999 FLNA-205ENST00000415241 704 ntTSL 511.48□□□□□ -0.572e-6■□□□□ 11
SUB1P53999 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13.12□□□□□ -0.316e-27■□□□□ 11
SUB1P53999 TLN1-203ENST00000464379 814 ntTSL 310.21□□□□□ -0.778e-7■□□□□ 11
SUB1P53999 TLN1-204ENST00000465002 543 ntTSL 49.36□□□□□ -0.918e-7■□□□□ 11
SUB1P53999 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.192e-9■□□□□ 11
SUB1P53999 TERF2IP-202ENST00000564671 1266 ntTSL 28.42□□□□□ -1.062e-9■□□□□ 11
SUB1P53999 FLNA-218ENST00000498491 914 ntTSL 513.52□□□□□ -0.251e-6■□□□□ 10.9
SUB1P53999 RPS19BP1-203ENST00000459956 852 ntTSL 215.6■□□□□ 0.094e-7■□□□□ 10.9
SUB1P53999 RPS19BP1-202ENST00000420879 861 ntTSL 214.52□□□□□ -0.094e-7■□□□□ 10.9
SUB1P53999 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.194e-7■□□□□ 10.9
SUB1P53999 RPS19BP1-205ENST00000488602 2801 ntTSL 210.71□□□□□ -0.694e-7■□□□□ 10.9
SUB1P53999 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -02e-6■□□□□ 10.9
SUB1P53999 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.152e-6■□□□□ 10.9
SUB1P53999 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.162e-6■□□□□ 10.9
SUB1P53999 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.162e-6■□□□□ 10.9
SUB1P53999 ABHD14B-207ENST00000487005 1998 ntTSL 213.79□□□□□ -0.22e-6■□□□□ 10.9
SUB1P53999 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC13.53□□□□□ -0.242e-6■□□□□ 10.9
SUB1P53999 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.56□□□□□ -0.42e-6■□□□□ 10.9
SUB1P53999 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC11.52□□□□□ -0.572e-6■□□□□ 10.9
SUB1P53999 PCBP4-213ENST00000489595 539 ntTSL 48.59□□□□□ -1.032e-6■□□□□ 10.9
SUB1P53999 FAM96A-201ENST00000300030 1105 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.875e-7■□□□□ 10.9
SUB1P53999 FAM96A-202ENST00000380290 826 ntTSL 2 BASIC8.84□□□□□ -0.995e-7■□□□□ 10.9
SUB1P53999 EEF1A1-205ENST00000455918 701 ntTSL 214.11□□□□□ -0.152e-75■□□□□ 10.9
SUB1P53999 EEF1A1-204ENST00000356303 635 ntTSL 26.5□□□□□ -1.372e-75■□□□□ 10.9
SUB1P53999 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.33■□□□□ 0.375e-8■□□□□ 10.9
SUB1P53999 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.145e-8■□□□□ 10.9
SUB1P53999 SREBF2-202ENST00000424354 5699 ntTSL 1 (best)12.53□□□□□ -0.45e-8■□□□□ 10.9
SUB1P53999 SREBF2-208ENST00000491541 4043 ntTSL 1 (best)8.06□□□□□ -1.125e-8■□□□□ 10.9
SUB1P53999 SLC6A8-202ENST00000413787 468 ntTSL 513.47□□□□□ -0.254e-13■□□□□ 10.9
SUB1P53999 SLC6A8-205ENST00000442457 523 ntTSL 39.09□□□□□ -0.954e-13■□□□□ 10.9
SUB1P53999 SLC6A8-206ENST00000457723 266 ntTSL 58.98□□□□□ -0.974e-13■□□□□ 10.9
SUB1P53999 EIF2S1-201ENST00000256383 4485 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.982e-6■□□□□ 10.9
SUB1P53999 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.914e-9■□□□□ 10.9
SUB1P53999 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC12.92□□□□□ -0.344e-9■□□□□ 10.9
Retrieved 100 of 11,644 protein–RNA pairs in 160.3 ms