RNA–Protein interactions for RNA: ENST00000641720.1

PHGDH-225, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 548 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-225ENST00000641720 NISCHQ9Y2I1 1504 aa19.27■□□□□ 0.68
PHGDH-225ENST00000641720 ABCC9O60706 1549 aa17.66■□□□□ 0.42
PHGDH-225ENST00000641720 CCDC180Q9P1Z9 1646 aa17.58■□□□□ 0.4
PHGDH-225ENST00000641720 DNAJC5BQ9UF47 199 aa16.9■□□□□ 0.3
PHGDH-225ENST00000641720 RB1CC1Q8TDY2 1594 aa16.72■□□□□ 0.27
PHGDH-225ENST00000641720 UNC13AQ9UPW8 1703 aa16.67■□□□□ 0.26
PHGDH-225ENST00000641720 NACADO15069 1562 aa16.55■□□□□ 0.24
PHGDH-225ENST00000641720 BICRAQ9NZM4 1560 aa16.43■□□□□ 0.22
PHGDH-225ENST00000641720 MYO15BQ96JP2 1530 aa16.29■□□□□ 0.2
PHGDH-225ENST00000641720 PABPN1Q86U42 306 aaKnown RBP eCLIP16.26■□□□□ 0.19
PHGDH-225ENST00000641720 CC2D2AQ9P2K1 1620 aa16.06■□□□□ 0.16
PHGDH-225ENST00000641720 SHROOM4Q9ULL8 1493 aa16.05■□□□□ 0.16
PHGDH-225ENST00000641720 DCAF1Q9Y4B6 1507 aa15.96■□□□□ 0.15
PHGDH-225ENST00000641720 DCAF8L2P0C7V8 631 aa15.96■□□□□ 0.15
PHGDH-225ENST00000641720 ZCCHC6Q5VYS8 1495 aaKnown RBP15.95■□□□□ 0.14
PHGDH-225ENST00000641720 EIF4G1Q04637 1599 aaKnown RBP15.94■□□□□ 0.14
PHGDH-225ENST00000641720 CECR2Q9BXF3 1484 aa15.93■□□□□ 0.14
PHGDH-225ENST00000641720 SCRIBQ14160 1630 aa15.85■□□□□ 0.13
PHGDH-225ENST00000641720 DNAJC5Q9H3Z4 198 aa15.66■□□□□ 0.1
PHGDH-225ENST00000641720 CUX2O14529 1486 aa15.39■□□□□ 0.05
PHGDH-225ENST00000641720 NCAPD3P42695 1498 aa15.27■□□□□ 0.03
PHGDH-225ENST00000641720 THOC2Q8NI27 1593 aaKnown RBP15.2■□□□□ 0.02
PHGDH-225ENST00000641720 HMGXB3Q12766 1538 aa15.19■□□□□ 0.02
PHGDH-225ENST00000641720 ATAD2BQ9ULI0 1458 aa15.17■□□□□ 0.02
PHGDH-225ENST00000641720 SMARCA4P51532 1647 aa15.16■□□□□ 0.02
PHGDH-225ENST00000641720 ERCC6Q03468 1493 aa15.15■□□□□ 0.02
PHGDH-225ENST00000641720 NESP48681 1621 aa15.15■□□□□ 0.02
PHGDH-225ENST00000641720 SMARCA2P51531 1590 aa15.1■□□□□ 0.01
PHGDH-225ENST00000641720 KIF21AQ7Z4S6 1674 aa15.09■□□□□ 0.01
PHGDH-225ENST00000641720 PEG3Q9GZU2 1588 aa15.07■□□□□ 0
PHGDH-225ENST00000641720 LAMC3Q9Y6N6 1575 aa15.01□□□□□ -0.01
PHGDH-225ENST00000641720 BAZ1AQ9NRL2 1556 aaPredicted RBP14.94□□□□□ -0.02
PHGDH-225ENST00000641720 BAZ1BQ9UIG0 1483 aaKnown RBP14.94□□□□□ -0.02
PHGDH-225ENST00000641720 MROH2BQ7Z745 1585 aa14.86□□□□□ -0.03
PHGDH-225ENST00000641720 WDR62O43379 1518 aa14.83□□□□□ -0.04
PHGDH-225ENST00000641720 PDS5BQ9NTI5 1447 aa14.76□□□□□ -0.05
PHGDH-225ENST00000641720 MRC2Q9UBG0 1479 aa14.76□□□□□ -0.05
PHGDH-225ENST00000641720 WIZO95785 1651 aa14.71□□□□□ -0.06
PHGDH-225ENST00000641720 CADPSQ9ULU8 1353 aa14.7□□□□□ -0.06
PHGDH-225ENST00000641720 TRIM41Q8WV44 630 aa14.67□□□□□ -0.06
PHGDH-225ENST00000641720 PRDM2Q13029 1718 aa14.63□□□□□ -0.07
PHGDH-225ENST00000641720 CEP164Q9UPV0 1460 aa14.6□□□□□ -0.07
PHGDH-225ENST00000641720 RIMBP3CA6NJZ7 1639 aa14.57□□□□□ -0.08
PHGDH-225ENST00000641720 RIMBP3BA6NNM3 1639 aa14.57□□□□□ -0.08
PHGDH-225ENST00000641720 RIMBP3Q9UFD9 1639 aa14.57□□□□□ -0.08
PHGDH-225ENST00000641720 FANCD2Q9BXW9 1451 aa14.57□□□□□ -0.08
PHGDH-225ENST00000641720 URB2Q14146 1524 aaKnown RBP14.56□□□□□ -0.08
PHGDH-225ENST00000641720 CFTRP13569 1480 aa14.56□□□□□ -0.08
PHGDH-225ENST00000641720 TOP2AP11388 1531 aaKnown RBP14.46□□□□□ -0.1
PHGDH-225ENST00000641720 ARHGEF11O15085 1522 aa14.43□□□□□ -0.1
PHGDH-225ENST00000641720 OSCARQ8IYS5 282 aa14.43□□□□□ -0.1
PHGDH-225ENST00000641720 CHD1O14646 1710 aa14.41□□□□□ -0.1
PHGDH-225ENST00000641720 ZNF608Q9ULD9 1512 aaPredicted RBP14.41□□□□□ -0.1
PHGDH-225ENST00000641720 EIF4G3O43432 1585 aaKnown RBP14.39□□□□□ -0.11
PHGDH-225ENST00000641720 RSF1Q96T23 1441 aaPredicted RBP14.37□□□□□ -0.11
PHGDH-225ENST00000641720 TARBP1Q13395 1621 aaKnown RBP14.33□□□□□ -0.12
PHGDH-225ENST00000641720 IFT140Q96RY7 1462 aa14.32□□□□□ -0.12
PHGDH-225ENST00000641720 TOPBP1Q92547 1522 aa14.31□□□□□ -0.12
PHGDH-225ENST00000641720 ARAP1Q96P48 1450 aa14.29□□□□□ -0.12
PHGDH-225ENST00000641720 DNMBPQ6XZF7 1577 aa14.26□□□□□ -0.13
PHGDH-225ENST00000641720 CCDC88BA6NC98 1476 aa14.24□□□□□ -0.13
PHGDH-225ENST00000641720 CLASP1Q7Z460 1538 aa14.19□□□□□ -0.14
PHGDH-225ENST00000641720 ABCC8Q09428 1581 aa14.17□□□□□ -0.14
PHGDH-225ENST00000641720 AQRO60306 1485 aaKnown RBP eCLIP14.15□□□□□ -0.14
PHGDH-225ENST00000641720 POLA1P09884 1462 aaPredicted RBP14.14□□□□□ -0.15
PHGDH-225ENST00000641720 WDR97A6NE52 1622 aa14.14□□□□□ -0.15
PHGDH-225ENST00000641720 CYB5RLQ6IPT4 315 aa14.1□□□□□ -0.15
PHGDH-225ENST00000641720 RAD54L2Q9Y4B4 1467 aa14.06□□□□□ -0.16
PHGDH-225ENST00000641720 PBRM1Q86U86 1689 aa14.04□□□□□ -0.16
PHGDH-225ENST00000641720 SNAPC4Q5SXM2 1469 aa14.03□□□□□ -0.16
PHGDH-225ENST00000641720 SYNJ1O43426 1573 aa14.01□□□□□ -0.17
PHGDH-225ENST00000641720 CUX1P39880 1505 aa13.99□□□□□ -0.17
PHGDH-225ENST00000641720 FGD5Q6ZNL6 1462 aa13.99□□□□□ -0.17
PHGDH-225ENST00000641720 MAGI1Q96QZ7 1491 aaPredicted RBP13.99□□□□□ -0.17
PHGDH-225ENST00000641720 KIF13AQ9H1H9 1805 aa13.96□□□□□ -0.17
PHGDH-225ENST00000641720 ABCA5Q8WWZ7 1642 aa13.96□□□□□ -0.17
PHGDH-225ENST00000641720 TDRD9Q8NDG6 1382 aaKnown RBP13.96□□□□□ -0.18
PHGDH-225ENST00000641720 SOGA1O94964 1423 aa13.94□□□□□ -0.18
PHGDH-225ENST00000641720 TRHP20396 242 aaPredicted RBP13.94□□□□□ -0.18
PHGDH-225ENST00000641720 SYNJ2O15056 1496 aa13.93□□□□□ -0.18
PHGDH-225ENST00000641720 ERCC6L2Q5T890 1561 aa13.93□□□□□ -0.18
PHGDH-225ENST00000641720 GRIN2BQ13224 1484 aa13.91□□□□□ -0.18
PHGDH-225ENST00000641720 GAPVD1Q14C86 1478 aa13.89□□□□□ -0.19
PHGDH-225ENST00000641720 SHROOM2Q13796 1616 aa13.89□□□□□ -0.19
PHGDH-225ENST00000641720 FBLN2P98095 1184 aa13.87□□□□□ -0.19
PHGDH-225ENST00000641720 CEP170Q5SW79 1584 aa13.84□□□□□ -0.19
PHGDH-225ENST00000641720 ABCA10Q8WWZ4 1543 aa13.84□□□□□ -0.19
PHGDH-225ENST00000641720 ADAMTS12P58397 1594 aa13.83□□□□□ -0.19
PHGDH-225ENST00000641720 NUP160Q12769 1436 aa13.79□□□□□ -0.2
PHGDH-225ENST00000641720 GRIN2AQ12879 1464 aa13.78□□□□□ -0.2
PHGDH-225ENST00000641720 CHMP7Q8WUX9 453 aaPredicted RBP13.77□□□□□ -0.21
PHGDH-225ENST00000641720 BIVM-ERCC5R4GMW8 1640 aa13.76□□□□□ -0.21
PHGDH-225ENST00000641720 AEBP2Q6ZN18 517 aaPredicted RBP13.72□□□□□ -0.21
PHGDH-225ENST00000641720 TOP2BQ02880 1626 aa13.68□□□□□ -0.22
PHGDH-225ENST00000641720 DIP2BQ9P265 1576 aa13.67□□□□□ -0.22
PHGDH-225ENST00000641720 RUSC2Q8N2Y8 1516 aa13.67□□□□□ -0.22
PHGDH-225ENST00000641720 ERICH3Q5RHP9 1530 aa13.65□□□□□ -0.22
PHGDH-225ENST00000641720 ADCY10Q96PN6 1610 aa13.64□□□□□ -0.23
PHGDH-225ENST00000641720 MAPKBP1O60336 1514 aa13.64□□□□□ -0.23
PHGDH-225ENST00000641720 FHAD1B1AJZ9 1412 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 237.7 ms