RNA–Protein interactions for RNA: ENST00000641587.1

PHGDH-222, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-222ENST00000641587 NISCHQ9Y2I1 1504 aa25.4■■□□□ 1.66
PHGDH-222ENST00000641587 ABCC9O60706 1549 aa23.12■■□□□ 1.29
PHGDH-222ENST00000641587 CCDC180Q9P1Z9 1646 aa22.86■■□□□ 1.25
PHGDH-222ENST00000641587 DNAJC5BQ9UF47 199 aa21.86■■□□□ 1.09
PHGDH-222ENST00000641587 RB1CC1Q8TDY2 1594 aa21.85■■□□□ 1.09
PHGDH-222ENST00000641587 NACADO15069 1562 aa21.64■■□□□ 1.05
PHGDH-222ENST00000641587 DCAF8L2P0C7V8 631 aa21.53■■□□□ 1.04
PHGDH-222ENST00000641587 PABPN1Q86U42 306 aaKnown RBP eCLIP21.49■■□□□ 1.03
PHGDH-222ENST00000641587 UNC13AQ9UPW8 1703 aa21.45■■□□□ 1.02
PHGDH-222ENST00000641587 BICRAQ9NZM4 1560 aa21.28■■□□□ 1
PHGDH-222ENST00000641587 MYO15BQ96JP2 1530 aa21.24■□□□□ 0.99
PHGDH-222ENST00000641587 ZCCHC6Q5VYS8 1495 aaKnown RBP21.02■□□□□ 0.96
PHGDH-222ENST00000641587 DCAF1Q9Y4B6 1507 aa20.91■□□□□ 0.94
PHGDH-222ENST00000641587 SCRIBQ14160 1630 aa20.9■□□□□ 0.94
PHGDH-222ENST00000641587 CC2D2AQ9P2K1 1620 aa20.86■□□□□ 0.93
PHGDH-222ENST00000641587 SHROOM4Q9ULL8 1493 aa20.85■□□□□ 0.93
PHGDH-222ENST00000641587 CECR2Q9BXF3 1484 aa20.81■□□□□ 0.92
PHGDH-222ENST00000641587 EIF4G1Q04637 1599 aaKnown RBP20.76■□□□□ 0.91
PHGDH-222ENST00000641587 DNAJC5Q9H3Z4 198 aa20.13■□□□□ 0.81
PHGDH-222ENST00000641587 NCAPD3P42695 1498 aa19.98■□□□□ 0.79
PHGDH-222ENST00000641587 ATAD2BQ9ULI0 1458 aa19.93■□□□□ 0.78
PHGDH-222ENST00000641587 CUX2O14529 1486 aa19.92■□□□□ 0.78
PHGDH-222ENST00000641587 ERCC6Q03468 1493 aa19.92■□□□□ 0.78
PHGDH-222ENST00000641587 SMARCA4P51532 1647 aa19.87■□□□□ 0.77
PHGDH-222ENST00000641587 HMGXB3Q12766 1538 aa19.83■□□□□ 0.77
PHGDH-222ENST00000641587 NESP48681 1621 aa19.83■□□□□ 0.76
PHGDH-222ENST00000641587 SMARCA2P51531 1590 aa19.83■□□□□ 0.76
PHGDH-222ENST00000641587 BAZ1BQ9UIG0 1483 aaKnown RBP19.72■□□□□ 0.75
PHGDH-222ENST00000641587 BAZ1AQ9NRL2 1556 aaPredicted RBP19.71■□□□□ 0.75
PHGDH-222ENST00000641587 THOC2Q8NI27 1593 aaKnown RBP19.65■□□□□ 0.74
PHGDH-222ENST00000641587 PEG3Q9GZU2 1588 aa19.65■□□□□ 0.74
PHGDH-222ENST00000641587 MROH2BQ7Z745 1585 aa19.61■□□□□ 0.73
PHGDH-222ENST00000641587 LAMC3Q9Y6N6 1575 aa19.57■□□□□ 0.72
PHGDH-222ENST00000641587 KIF21AQ7Z4S6 1674 aa19.56■□□□□ 0.72
PHGDH-222ENST00000641587 PDS5BQ9NTI5 1447 aa19.43■□□□□ 0.7
PHGDH-222ENST00000641587 WIZO95785 1651 aa19.39■□□□□ 0.69
PHGDH-222ENST00000641587 CADPSQ9ULU8 1353 aa19.37■□□□□ 0.69
PHGDH-222ENST00000641587 MRC2Q9UBG0 1479 aa19.33■□□□□ 0.68
PHGDH-222ENST00000641587 WDR62O43379 1518 aa19.3■□□□□ 0.68
PHGDH-222ENST00000641587 TRIM41Q8WV44 630 aa19.24■□□□□ 0.67
PHGDH-222ENST00000641587 CEP164Q9UPV0 1460 aa19.22■□□□□ 0.67
PHGDH-222ENST00000641587 FANCD2Q9BXW9 1451 aa19.19■□□□□ 0.66
PHGDH-222ENST00000641587 CFTRP13569 1480 aa19.12■□□□□ 0.65
PHGDH-222ENST00000641587 RSF1Q96T23 1441 aaPredicted RBP19.1■□□□□ 0.65
PHGDH-222ENST00000641587 TOP2AP11388 1531 aaKnown RBP19.08■□□□□ 0.64
PHGDH-222ENST00000641587 URB2Q14146 1524 aaKnown RBP19.06■□□□□ 0.64
PHGDH-222ENST00000641587 OSCARQ8IYS5 282 aa18.96■□□□□ 0.63
PHGDH-222ENST00000641587 PRDM2Q13029 1718 aa18.94■□□□□ 0.62
PHGDH-222ENST00000641587 ZNF608Q9ULD9 1512 aaPredicted RBP18.88■□□□□ 0.61
PHGDH-222ENST00000641587 CCDC88BA6NC98 1476 aa18.87■□□□□ 0.61
PHGDH-222ENST00000641587 RIMBP3CA6NJZ7 1639 aa18.83■□□□□ 0.61
PHGDH-222ENST00000641587 RIMBP3BA6NNM3 1639 aa18.83■□□□□ 0.61
PHGDH-222ENST00000641587 RIMBP3Q9UFD9 1639 aa18.83■□□□□ 0.61
PHGDH-222ENST00000641587 TOPBP1Q92547 1522 aa18.81■□□□□ 0.6
PHGDH-222ENST00000641587 IFT140Q96RY7 1462 aa18.81■□□□□ 0.6
PHGDH-222ENST00000641587 EIF4G3O43432 1585 aaKnown RBP18.76■□□□□ 0.59
PHGDH-222ENST00000641587 ARHGEF11O15085 1522 aa18.74■□□□□ 0.59
PHGDH-222ENST00000641587 DNMBPQ6XZF7 1577 aa18.71■□□□□ 0.59
PHGDH-222ENST00000641587 TARBP1Q13395 1621 aaKnown RBP18.67■□□□□ 0.58
PHGDH-222ENST00000641587 CHD1O14646 1710 aa18.66■□□□□ 0.58
PHGDH-222ENST00000641587 ABCC8Q09428 1581 aa18.66■□□□□ 0.58
PHGDH-222ENST00000641587 AQRO60306 1485 aaKnown RBP eCLIP18.65■□□□□ 0.582e-7■□□□□ 9.8
PHGDH-222ENST00000641587 POLA1P09884 1462 aaPredicted RBP18.61■□□□□ 0.57
PHGDH-222ENST00000641587 CYB5RLQ6IPT4 315 aa18.58■□□□□ 0.56
PHGDH-222ENST00000641587 RAD54L2Q9Y4B4 1467 aa18.57■□□□□ 0.56
PHGDH-222ENST00000641587 ARAP1Q96P48 1450 aa18.56■□□□□ 0.56
PHGDH-222ENST00000641587 FBLN2P98095 1184 aa18.55■□□□□ 0.56
PHGDH-222ENST00000641587 TDRD9Q8NDG6 1382 aaKnown RBP18.51■□□□□ 0.55
PHGDH-222ENST00000641587 SOGA1O94964 1423 aa18.49■□□□□ 0.55
PHGDH-222ENST00000641587 SNAPC4Q5SXM2 1469 aa18.47■□□□□ 0.55
PHGDH-222ENST00000641587 FGD5Q6ZNL6 1462 aa18.47■□□□□ 0.55
PHGDH-222ENST00000641587 CUX1P39880 1505 aa18.44■□□□□ 0.54
PHGDH-222ENST00000641587 TRHP20396 242 aaPredicted RBP18.43■□□□□ 0.54
PHGDH-222ENST00000641587 CLASP1Q7Z460 1538 aa18.42■□□□□ 0.54
PHGDH-222ENST00000641587 WDR97A6NE52 1622 aa18.38■□□□□ 0.53
PHGDH-222ENST00000641587 MAGI1Q96QZ7 1491 aaPredicted RBP18.36■□□□□ 0.53
PHGDH-222ENST00000641587 SYNJ1O43426 1573 aa18.35■□□□□ 0.53
PHGDH-222ENST00000641587 GRIN2BQ13224 1484 aa18.34■□□□□ 0.53
PHGDH-222ENST00000641587 CHMP7Q8WUX9 453 aaPredicted RBP18.34■□□□□ 0.53
PHGDH-222ENST00000641587 PBRM1Q86U86 1689 aa18.32■□□□□ 0.52
PHGDH-222ENST00000641587 SYNJ2O15056 1496 aa18.31■□□□□ 0.52
PHGDH-222ENST00000641587 GAPVD1Q14C86 1478 aa18.26■□□□□ 0.51
PHGDH-222ENST00000641587 ABCA5Q8WWZ7 1642 aa18.24■□□□□ 0.51
PHGDH-222ENST00000641587 ABCA10Q8WWZ4 1543 aa18.22■□□□□ 0.51
PHGDH-222ENST00000641587 ERCC6L2Q5T890 1561 aa18.17■□□□□ 0.5
PHGDH-222ENST00000641587 SUPT5HO00267 1087 aaKnown RBP18.13■□□□□ 0.49
PHGDH-222ENST00000641587 GRIN2AQ12879 1464 aa18.13■□□□□ 0.49
PHGDH-222ENST00000641587 ADAMTS12P58397 1594 aa18.13■□□□□ 0.49
PHGDH-222ENST00000641587 CEP170Q5SW79 1584 aa18.12■□□□□ 0.49
PHGDH-222ENST00000641587 WRNQ14191 1432 aaPredicted RBP eCLIP18.08■□□□□ 0.49
PHGDH-222ENST00000641587 BIVM-ERCC5R4GMW8 1640 aa18.07■□□□□ 0.48
PHGDH-222ENST00000641587 NUP160Q12769 1436 aa18.06■□□□□ 0.48
PHGDH-222ENST00000641587 TOP2BQ02880 1626 aa18.05■□□□□ 0.48
PHGDH-222ENST00000641587 SHROOM2Q13796 1616 aa18.02■□□□□ 0.48
PHGDH-222ENST00000641587 FHAD1B1AJZ9 1412 aa18■□□□□ 0.47
PHGDH-222ENST00000641587 AEBP2Q6ZN18 517 aaPredicted RBP18■□□□□ 0.47
PHGDH-222ENST00000641587 ERICH3Q5RHP9 1530 aa17.97■□□□□ 0.47
PHGDH-222ENST00000641587 KIF13AQ9H1H9 1805 aa17.93■□□□□ 0.46
PHGDH-222ENST00000641587 PRG4Q92954 1404 aaPredicted RBP17.91■□□□□ 0.46
PHGDH-222ENST00000641587 RUSC2Q8N2Y8 1516 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms