RNA–Protein interactions for RNA: ENST00000641573.1

PHGDH-221, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 1,180 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-221ENST00000641573 NISCHQ9Y2I1 1504 aa30.01■■■□□ 2.4
PHGDH-221ENST00000641573 ABCC9O60706 1549 aa27.44■■□□□ 1.98
PHGDH-221ENST00000641573 CCDC180Q9P1Z9 1646 aa26.87■■□□□ 1.89
PHGDH-221ENST00000641573 DNAJC5BQ9UF47 199 aa26.16■■□□□ 1.78
PHGDH-221ENST00000641573 RB1CC1Q8TDY2 1594 aa25.88■■□□□ 1.73
PHGDH-221ENST00000641573 NACADO15069 1562 aa25.53■■□□□ 1.68
PHGDH-221ENST00000641573 PABPN1Q86U42 306 aaKnown RBP eCLIP25.44■■□□□ 1.66
PHGDH-221ENST00000641573 DCAF8L2P0C7V8 631 aa25.35■■□□□ 1.65
PHGDH-221ENST00000641573 UNC13AQ9UPW8 1703 aa25.2■■□□□ 1.63
PHGDH-221ENST00000641573 MYO15BQ96JP2 1530 aa25.16■■□□□ 1.62
PHGDH-221ENST00000641573 ZCCHC6Q5VYS8 1495 aaKnown RBP25.07■■□□□ 1.6
PHGDH-221ENST00000641573 BICRAQ9NZM4 1560 aa25.05■■□□□ 1.6
PHGDH-221ENST00000641573 DCAF1Q9Y4B6 1507 aa24.95■■□□□ 1.58
PHGDH-221ENST00000641573 CECR2Q9BXF3 1484 aa24.78■■□□□ 1.56
PHGDH-221ENST00000641573 SHROOM4Q9ULL8 1493 aa24.75■■□□□ 1.55
PHGDH-221ENST00000641573 CC2D2AQ9P2K1 1620 aa24.74■■□□□ 1.55
PHGDH-221ENST00000641573 EIF4G1Q04637 1599 aaKnown RBP24.54■■□□□ 1.52
PHGDH-221ENST00000641573 DNAJC5Q9H3Z4 198 aa24.52■■□□□ 1.52
PHGDH-221ENST00000641573 SCRIBQ14160 1630 aa24.45■■□□□ 1.5
PHGDH-221ENST00000641573 CUX2O14529 1486 aa23.9■■□□□ 1.42
PHGDH-221ENST00000641573 ERCC6Q03468 1493 aa23.8■■□□□ 1.4
PHGDH-221ENST00000641573 NCAPD3P42695 1498 aa23.56■■□□□ 1.36
PHGDH-221ENST00000641573 ATAD2BQ9ULI0 1458 aa23.41■■□□□ 1.34
PHGDH-221ENST00000641573 NESP48681 1621 aa23.37■■□□□ 1.33
PHGDH-221ENST00000641573 SMARCA2P51531 1590 aa23.35■■□□□ 1.33
PHGDH-221ENST00000641573 HMGXB3Q12766 1538 aa23.35■■□□□ 1.33
PHGDH-221ENST00000641573 SUPT5HO00267 1087 aaKnown RBP23.32■■□□□ 1.32
PHGDH-221ENST00000641573 SMARCA4P51532 1647 aa23.3■■□□□ 1.32
PHGDH-221ENST00000641573 TRIM41Q8WV44 630 aa23.27■■□□□ 1.32
PHGDH-221ENST00000641573 BAZ1AQ9NRL2 1556 aaPredicted RBP23.27■■□□□ 1.32
PHGDH-221ENST00000641573 THOC2Q8NI27 1593 aaKnown RBP23.26■■□□□ 1.31
PHGDH-221ENST00000641573 PEG3Q9GZU2 1588 aa23.21■■□□□ 1.31
PHGDH-221ENST00000641573 BAZ1BQ9UIG0 1483 aaKnown RBP23.2■■□□□ 1.3
PHGDH-221ENST00000641573 LAMC3Q9Y6N6 1575 aa23.16■■□□□ 1.3
PHGDH-221ENST00000641573 RSF1Q96T23 1441 aaPredicted RBP23.14■■□□□ 1.29
PHGDH-221ENST00000641573 MROH2BQ7Z745 1585 aa23.11■■□□□ 1.29
PHGDH-221ENST00000641573 PDS5BQ9NTI5 1447 aa23.07■■□□□ 1.28
PHGDH-221ENST00000641573 KIF21AQ7Z4S6 1674 aa23.06■■□□□ 1.28
PHGDH-221ENST00000641573 WIZO95785 1651 aa22.9■■□□□ 1.26
PHGDH-221ENST00000641573 MRC2Q9UBG0 1479 aa22.88■■□□□ 1.25
PHGDH-221ENST00000641573 CADPSQ9ULU8 1353 aa22.84■■□□□ 1.25
PHGDH-221ENST00000641573 WDR62O43379 1518 aa22.82■■□□□ 1.24
PHGDH-221ENST00000641573 OSCARQ8IYS5 282 aa22.72■■□□□ 1.23
PHGDH-221ENST00000641573 CEP164Q9UPV0 1460 aa22.69■■□□□ 1.22
PHGDH-221ENST00000641573 TOP2AP11388 1531 aaKnown RBP22.65■■□□□ 1.22
PHGDH-221ENST00000641573 FANCD2Q9BXW9 1451 aa22.6■■□□□ 1.21
PHGDH-221ENST00000641573 RIMBP3CA6NJZ7 1639 aa22.46■■□□□ 1.19
PHGDH-221ENST00000641573 RIMBP3BA6NNM3 1639 aa22.46■■□□□ 1.19
PHGDH-221ENST00000641573 RIMBP3Q9UFD9 1639 aa22.46■■□□□ 1.19
PHGDH-221ENST00000641573 CFTRP13569 1480 aa22.44■■□□□ 1.18
PHGDH-221ENST00000641573 CCDC88BA6NC98 1476 aa22.41■■□□□ 1.18
PHGDH-221ENST00000641573 URB2Q14146 1524 aaKnown RBP22.41■■□□□ 1.18
PHGDH-221ENST00000641573 ARHGEF11O15085 1522 aa22.34■■□□□ 1.17
PHGDH-221ENST00000641573 CHIC1Q5VXU3 224 aa22.27■■□□□ 1.16
PHGDH-221ENST00000641573 IFT140Q96RY7 1462 aa22.25■■□□□ 1.15
PHGDH-221ENST00000641573 PRDM2Q13029 1718 aa22.24■■□□□ 1.15
PHGDH-221ENST00000641573 ZNF608Q9ULD9 1512 aaPredicted RBP22.23■■□□□ 1.15
PHGDH-221ENST00000641573 TRHP20396 242 aaPredicted RBP22.23■■□□□ 1.15
PHGDH-221ENST00000641573 CYB5RLQ6IPT4 315 aa22.23■■□□□ 1.15
PHGDH-221ENST00000641573 EIF4G3O43432 1585 aaKnown RBP22.11■■□□□ 1.13
PHGDH-221ENST00000641573 TOPBP1Q92547 1522 aa22.08■■□□□ 1.13
PHGDH-221ENST00000641573 ARAP1Q96P48 1450 aa22.06■■□□□ 1.12
PHGDH-221ENST00000641573 AEBP2Q6ZN18 517 aaPredicted RBP22.04■■□□□ 1.12
PHGDH-221ENST00000641573 ABCC8Q09428 1581 aa22.04■■□□□ 1.12
PHGDH-221ENST00000641573 CHD1O14646 1710 aa22.03■■□□□ 1.12
PHGDH-221ENST00000641573 FBLN2P98095 1184 aa22.02■■□□□ 1.12
PHGDH-221ENST00000641573 AQRO60306 1485 aaKnown RBP eCLIP21.97■■□□□ 1.112e-7■□□□□ 9.8
PHGDH-221ENST00000641573 DNMBPQ6XZF7 1577 aa21.96■■□□□ 1.11
PHGDH-221ENST00000641573 TARBP1Q13395 1621 aaKnown RBP21.91■■□□□ 1.1
PHGDH-221ENST00000641573 POLA1P09884 1462 aaPredicted RBP21.82■■□□□ 1.08
PHGDH-221ENST00000641573 WRNQ14191 1432 aaPredicted RBP eCLIP21.78■■□□□ 1.08
PHGDH-221ENST00000641573 CLASP1Q7Z460 1538 aa21.76■■□□□ 1.07
PHGDH-221ENST00000641573 TDRD9Q8NDG6 1382 aaKnown RBP21.75■■□□□ 1.07
PHGDH-221ENST00000641573 SYNJ1O43426 1573 aa21.75■■□□□ 1.07
PHGDH-221ENST00000641573 CHMP7Q8WUX9 453 aaPredicted RBP21.75■■□□□ 1.07
PHGDH-221ENST00000641573 SNAPC4Q5SXM2 1469 aa21.75■■□□□ 1.07
PHGDH-221ENST00000641573 RAD54L2Q9Y4B4 1467 aa21.74■■□□□ 1.07
PHGDH-221ENST00000641573 SOGA1O94964 1423 aa21.73■■□□□ 1.07
PHGDH-221ENST00000641573 WDR97A6NE52 1622 aa21.69■■□□□ 1.06
PHGDH-221ENST00000641573 MAGI1Q96QZ7 1491 aaPredicted RBP21.68■■□□□ 1.06
PHGDH-221ENST00000641573 CUX1P39880 1505 aa21.66■■□□□ 1.06
PHGDH-221ENST00000641573 GRIN2BQ13224 1484 aa21.62■■□□□ 1.05
PHGDH-221ENST00000641573 SYNJ2O15056 1496 aa21.61■■□□□ 1.05
PHGDH-221ENST00000641573 GAPVD1Q14C86 1478 aa21.61■■□□□ 1.05
PHGDH-221ENST00000641573 FGD5Q6ZNL6 1462 aa21.61■■□□□ 1.05
PHGDH-221ENST00000641573 TOP2BQ02880 1626 aa21.6■■□□□ 1.05
PHGDH-221ENST00000641573 BIVM-ERCC5R4GMW8 1640 aa21.58■■□□□ 1.05
PHGDH-221ENST00000641573 FAM9AQ8IZU1 332 aaPredicted RBP21.54■■□□□ 1.04
PHGDH-221ENST00000641573 PBRM1Q86U86 1689 aa21.47■■□□□ 1.03
PHGDH-221ENST00000641573 ABCA10Q8WWZ4 1543 aa21.45■■□□□ 1.02
PHGDH-221ENST00000641573 EEA1Q15075 1411 aa21.42■■□□□ 1.02
PHGDH-221ENST00000641573 LOC105371045A0A1W2PR82 267 aa21.41■■□□□ 1.02
PHGDH-221ENST00000641573 RUSC2Q8N2Y8 1516 aa21.39■■□□□ 1.02
PHGDH-221ENST00000641573 ABCA5Q8WWZ7 1642 aa21.37■■□□□ 1.01
PHGDH-221ENST00000641573 ERCC6L2Q5T890 1561 aa21.36■■□□□ 1.01
PHGDH-221ENST00000641573 GRIN2AQ12879 1464 aa21.32■■□□□ 1
PHGDH-221ENST00000641573 CSRNP3Q8WYN3 585 aa21.32■■□□□ 1
PHGDH-221ENST00000641573 CEP170Q5SW79 1584 aa21.31■■□□□ 1
PHGDH-221ENST00000641573 NUP160Q12769 1436 aa21.25■□□□□ 0.99
PHGDH-221ENST00000641573 KIF27Q86VH2 1401 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms