RNA–Protein interactions for RNA: ENST00000641513.1

PHGDH-219, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-219ENST00000641513 NISCHQ9Y2I1 1504 aa19.97■□□□□ 0.79
PHGDH-219ENST00000641513 CCDC180Q9P1Z9 1646 aa17.5■□□□□ 0.39
PHGDH-219ENST00000641513 ZCCHC6Q5VYS8 1495 aaKnown RBP16.75■□□□□ 0.27
PHGDH-219ENST00000641513 DCAF8L2P0C7V8 631 aa16.61■□□□□ 0.25
PHGDH-219ENST00000641513 ABCC9O60706 1549 aa16.56■□□□□ 0.24
PHGDH-219ENST00000641513 AEBP2Q6ZN18 517 aaPredicted RBP16.53■□□□□ 0.24
PHGDH-219ENST00000641513 DCAF1Q9Y4B6 1507 aa16.46■□□□□ 0.23
PHGDH-219ENST00000641513 SHROOM4Q9ULL8 1493 aa16.37■□□□□ 0.21
PHGDH-219ENST00000641513 NACADO15069 1562 aa16.26■□□□□ 0.19
PHGDH-219ENST00000641513 MYO15BQ96JP2 1530 aa16.25■□□□□ 0.19
PHGDH-219ENST00000641513 RB1CC1Q8TDY2 1594 aa16.17■□□□□ 0.18
PHGDH-219ENST00000641513 SCRIBQ14160 1630 aa16.13■□□□□ 0.17
PHGDH-219ENST00000641513 UNC13AQ9UPW8 1703 aa15.96■□□□□ 0.15
PHGDH-219ENST00000641513 SUPT5HO00267 1087 aaKnown RBP15.72■□□□□ 0.11
PHGDH-219ENST00000641513 BICRAQ9NZM4 1560 aa15.63■□□□□ 0.09
PHGDH-219ENST00000641513 PABPN1Q86U42 306 aaKnown RBP eCLIP15.59■□□□□ 0.09
PHGDH-219ENST00000641513 CECR2Q9BXF3 1484 aa15.52■□□□□ 0.07
PHGDH-219ENST00000641513 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
PHGDH-219ENST00000641513 RSF1Q96T23 1441 aaPredicted RBP15.45■□□□□ 0.06
PHGDH-219ENST00000641513 MROH2BQ7Z745 1585 aa15.44■□□□□ 0.06
PHGDH-219ENST00000641513 CHIC1Q5VXU3 224 aa15.42■□□□□ 0.06
PHGDH-219ENST00000641513 SMARCA4P51532 1647 aa15.41■□□□□ 0.06
PHGDH-219ENST00000641513 WIZO95785 1651 aa15.39■□□□□ 0.05
PHGDH-219ENST00000641513 DNAJC5BQ9UF47 199 aa15.19■□□□□ 0.02
PHGDH-219ENST00000641513 EIF4G1Q04637 1599 aaKnown RBP15.19■□□□□ 0.02
PHGDH-219ENST00000641513 TOP2AP11388 1531 aaKnown RBP15.17■□□□□ 0.02
PHGDH-219ENST00000641513 PEG3Q9GZU2 1588 aa15.15■□□□□ 0.02
PHGDH-219ENST00000641513 SMARCA2P51531 1590 aa15.13■□□□□ 0.01
PHGDH-219ENST00000641513 ATAD2BQ9ULI0 1458 aa15.1■□□□□ 0.01
PHGDH-219ENST00000641513 BAZ1BQ9UIG0 1483 aaKnown RBP15.07■□□□□ 0
PHGDH-219ENST00000641513 CC2D2AQ9P2K1 1620 aa15□□□□□ -0.01
PHGDH-219ENST00000641513 CCDC88BA6NC98 1476 aa15□□□□□ -0.01
PHGDH-219ENST00000641513 HMGXB3Q12766 1538 aa14.97□□□□□ -0.01
PHGDH-219ENST00000641513 NCAPD3P42695 1498 aa14.94□□□□□ -0.02
PHGDH-219ENST00000641513 TRIM41Q8WV44 630 aa14.77□□□□□ -0.05
PHGDH-219ENST00000641513 PRDM2Q13029 1718 aa14.76□□□□□ -0.05
PHGDH-219ENST00000641513 ABCC8Q09428 1581 aa14.73□□□□□ -0.05
PHGDH-219ENST00000641513 CFTRP13569 1480 aa14.61□□□□□ -0.07
PHGDH-219ENST00000641513 WRNQ14191 1432 aaPredicted RBP eCLIP14.58□□□□□ -0.07
PHGDH-219ENST00000641513 CADPSQ9ULU8 1353 aa14.58□□□□□ -0.08
PHGDH-219ENST00000641513 SYNJ1O43426 1573 aa14.57□□□□□ -0.08
PHGDH-219ENST00000641513 DNAJC5Q9H3Z4 198 aa14.57□□□□□ -0.08
PHGDH-219ENST00000641513 FAM9AQ8IZU1 332 aaPredicted RBP14.54□□□□□ -0.08
PHGDH-219ENST00000641513 LAMC3Q9Y6N6 1575 aa14.52□□□□□ -0.08
PHGDH-219ENST00000641513 NESP48681 1621 aa14.52□□□□□ -0.09
PHGDH-219ENST00000641513 BIVM-ERCC5R4GMW8 1640 aa14.52□□□□□ -0.09
PHGDH-219ENST00000641513 TOP2BQ02880 1626 aa14.5□□□□□ -0.09
PHGDH-219ENST00000641513 FANCD2Q9BXW9 1451 aa14.46□□□□□ -0.09
PHGDH-219ENST00000641513 KIF21AQ7Z4S6 1674 aa14.45□□□□□ -0.1
PHGDH-219ENST00000641513 CUX1P39880 1505 aa14.45□□□□□ -0.1
PHGDH-219ENST00000641513 LOC105371045A0A1W2PR82 267 aa14.43□□□□□ -0.1
PHGDH-219ENST00000641513 SOGA1O94964 1423 aa14.4□□□□□ -0.1
PHGDH-219ENST00000641513 CEP164Q9UPV0 1460 aa14.39□□□□□ -0.11
PHGDH-219ENST00000641513 EHMT2Q96KQ7 1210 aa14.39□□□□□ -0.11
PHGDH-219ENST00000641513 PDS5BQ9NTI5 1447 aa14.38□□□□□ -0.11
PHGDH-219ENST00000641513 RUSC2Q8N2Y8 1516 aa14.36□□□□□ -0.11
PHGDH-219ENST00000641513 DNMBPQ6XZF7 1577 aa14.35□□□□□ -0.11
PHGDH-219ENST00000641513 EEA1Q15075 1411 aa14.35□□□□□ -0.11
PHGDH-219ENST00000641513 FGD5Q6ZNL6 1462 aa14.31□□□□□ -0.12
PHGDH-219ENST00000641513 TOPBP1Q92547 1522 aa14.31□□□□□ -0.12
PHGDH-219ENST00000641513 CSRNP3Q8WYN3 585 aa14.28□□□□□ -0.12
PHGDH-219ENST00000641513 URB2Q14146 1524 aaKnown RBP14.27□□□□□ -0.12
PHGDH-219ENST00000641513 ERCC6Q03468 1493 aa14.23□□□□□ -0.13
PHGDH-219ENST00000641513 KIF27Q86VH2 1401 aa14.23□□□□□ -0.13
PHGDH-219ENST00000641513 KIF21BO75037 1637 aa14.23□□□□□ -0.13
PHGDH-219ENST00000641513 CUX2O14529 1486 aa14.22□□□□□ -0.13
PHGDH-219ENST00000641513 POLA1P09884 1462 aaPredicted RBP14.21□□□□□ -0.13
PHGDH-219ENST00000641513 MRC2Q9UBG0 1479 aa14.21□□□□□ -0.13
PHGDH-219ENST00000641513 GOLGA3Q08378 1498 aa14.19□□□□□ -0.14
PHGDH-219ENST00000641513 RAD54L2Q9Y4B4 1467 aa14.19□□□□□ -0.14
PHGDH-219ENST00000641513 WDR97A6NE52 1622 aa14.19□□□□□ -0.14
PHGDH-219ENST00000641513 UBTFP17480 764 aaKnown RBP14.17□□□□□ -0.14
PHGDH-219ENST00000641513 SENP3Q9H4L4 574 aaPredicted RBP14.17□□□□□ -0.14
PHGDH-219ENST00000641513 ABCA10Q8WWZ4 1543 aa14.14□□□□□ -0.15
PHGDH-219ENST00000641513 THOC2Q8NI27 1593 aaKnown RBP14.13□□□□□ -0.15
PHGDH-219ENST00000641513 WDR62O43379 1518 aa14.12□□□□□ -0.15
PHGDH-219ENST00000641513 RAPGEF2Q9Y4G8 1499 aa14.11□□□□□ -0.15
PHGDH-219ENST00000641513 TARBP1Q13395 1621 aaKnown RBP14.1□□□□□ -0.15
PHGDH-219ENST00000641513 ERICH3Q5RHP9 1530 aa14.1□□□□□ -0.15
PHGDH-219ENST00000641513 TNIKQ9UKE5 1360 aa14.09□□□□□ -0.15
PHGDH-219ENST00000641513 PBRM1Q86U86 1689 aa14.08□□□□□ -0.16
PHGDH-219ENST00000641513 ABCA5Q8WWZ7 1642 aa14.08□□□□□ -0.16
PHGDH-219ENST00000641513 PRXQ9BXM0 1461 aa14.07□□□□□ -0.16
PHGDH-219ENST00000641513 CUL7Q14999 1698 aa14.07□□□□□ -0.16
PHGDH-219ENST00000641513 CEP162Q5TB80 1403 aa14.06□□□□□ -0.16
PHGDH-219ENST00000641513 IGF1RP08069 1367 aa14.05□□□□□ -0.16
PHGDH-219ENST00000641513 TDRD9Q8NDG6 1382 aaKnown RBP14.04□□□□□ -0.16
PHGDH-219ENST00000641513 GAPVD1Q14C86 1478 aa14.04□□□□□ -0.16
PHGDH-219ENST00000641513 IFT140Q96RY7 1462 aa14.02□□□□□ -0.16
PHGDH-219ENST00000641513 CARMIL1Q5VZK9 1371 aa14.02□□□□□ -0.17
PHGDH-219ENST00000641513 RANGAP1P46060 587 aaPredicted RBP14.01□□□□□ -0.17
PHGDH-219ENST00000641513 CTTNBP2Q8WZ74 1663 aa13.98□□□□□ -0.17
PHGDH-219ENST00000641513 EIF4G3O43432 1585 aaKnown RBP13.96□□□□□ -0.17
PHGDH-219ENST00000641513 AQRO60306 1485 aaKnown RBP eCLIP13.96□□□□□ -0.172e-7■□□□□ 9.8
PHGDH-219ENST00000641513 CLIP1P30622 1438 aa13.96□□□□□ -0.18
PHGDH-219ENST00000641513 ZNF608Q9ULD9 1512 aaPredicted RBP13.95□□□□□ -0.18
PHGDH-219ENST00000641513 PHF23Q9BUL5 403 aaPredicted RBP13.92□□□□□ -0.18
PHGDH-219ENST00000641513 GRIN2BQ13224 1484 aa13.92□□□□□ -0.18
PHGDH-219ENST00000641513 ADAMTS12P58397 1594 aa13.91□□□□□ -0.18
PHGDH-219ENST00000641513 FHAD1B1AJZ9 1412 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms