RNA–Protein interactions for RNA: ENST00000640568.1

TSPAN9-208, Transcript of tetraspanin 9, humanhuman

TSL 5

Gene TSPAN9, Length 1,465 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN9-208ENST00000640568 NISCHQ9Y2I1 1504 aa51.09■■■■■ 5.77
TSPAN9-208ENST00000640568 CCDC180Q9P1Z9 1646 aa45.21■■■■■ 4.83
TSPAN9-208ENST00000640568 ABCC9O60706 1549 aa43.58■■■■■ 4.57
TSPAN9-208ENST00000640568 ZCCHC6Q5VYS8 1495 aaKnown RBP42.7■■■■■ 4.43
TSPAN9-208ENST00000640568 DCAF8L2P0C7V8 631 aa42.5■■■■■ 4.39
TSPAN9-208ENST00000640568 NACADO15069 1562 aa42.31■■■■■ 4.36
TSPAN9-208ENST00000640568 DCAF1Q9Y4B6 1507 aa42.29■■■■■ 4.36
TSPAN9-208ENST00000640568 RB1CC1Q8TDY2 1594 aa42.24■■■■■ 4.35
TSPAN9-208ENST00000640568 MYO15BQ96JP2 1530 aa42.21■■■■■ 4.35
TSPAN9-208ENST00000640568 UNC13AQ9UPW8 1703 aa41.34■■■■■ 4.21
TSPAN9-208ENST00000640568 SCRIBQ14160 1630 aa41.32■■■■■ 4.2
TSPAN9-208ENST00000640568 BICRAQ9NZM4 1560 aa40.85■■■■■ 4.13
TSPAN9-208ENST00000640568 SHROOM4Q9ULL8 1493 aa40.81■■■■■ 4.12
TSPAN9-208ENST00000640568 PABPN1Q86U42 306 aaKnown RBP eCLIP40.8■■■■■ 4.12
TSPAN9-208ENST00000640568 EIF4G1Q04637 1599 aaKnown RBP39.77■■■■□ 3.96
TSPAN9-208ENST00000640568 CECR2Q9BXF3 1484 aa39.7■■■■□ 3.95
TSPAN9-208ENST00000640568 BAZ1AQ9NRL2 1556 aaPredicted RBP39.6■■■■□ 3.93
TSPAN9-208ENST00000640568 SMARCA4P51532 1647 aa39.55■■■■□ 3.92
TSPAN9-208ENST00000640568 CC2D2AQ9P2K1 1620 aa39.47■■■■□ 3.91
TSPAN9-208ENST00000640568 MROH2BQ7Z745 1585 aa39.38■■■■□ 3.9
TSPAN9-208ENST00000640568 DNAJC5BQ9UF47 199 aa39.28■■■■□ 3.88
TSPAN9-208ENST00000640568 SMARCA2P51531 1590 aa39.16■■■■□ 3.86
TSPAN9-208ENST00000640568 RSF1Q96T23 1441 aaPredicted RBP39.14■■■■□ 3.86
TSPAN9-208ENST00000640568 ATAD2BQ9ULI0 1458 aa39.12■■■■□ 3.85
TSPAN9-208ENST00000640568 PEG3Q9GZU2 1588 aa39.1■■■■□ 3.85
TSPAN9-208ENST00000640568 WIZO95785 1651 aa39.05■■■■□ 3.84
TSPAN9-208ENST00000640568 NCAPD3P42695 1498 aa38.97■■■■□ 3.83
TSPAN9-208ENST00000640568 HMGXB3Q12766 1538 aa38.9■■■■□ 3.82
TSPAN9-208ENST00000640568 BAZ1BQ9UIG0 1483 aaKnown RBP38.89■■■■□ 3.82
TSPAN9-208ENST00000640568 SUPT5HO00267 1087 aaKnown RBP38.73■■■■□ 3.79
TSPAN9-208ENST00000640568 TOP2AP11388 1531 aaKnown RBP38.66■■■■□ 3.78
TSPAN9-208ENST00000640568 CCDC88BA6NC98 1476 aa38.16■■■■□ 3.7
TSPAN9-208ENST00000640568 LAMC3Q9Y6N6 1575 aa37.93■■■■□ 3.66
TSPAN9-208ENST00000640568 CADPSQ9ULU8 1353 aa37.9■■■■□ 3.66
TSPAN9-208ENST00000640568 NESP48681 1621 aa37.87■■■■□ 3.65
TSPAN9-208ENST00000640568 CFTRP13569 1480 aa37.8■■■■□ 3.64
TSPAN9-208ENST00000640568 PRDM2Q13029 1718 aa37.74■■■■□ 3.63
TSPAN9-208ENST00000640568 PDS5BQ9NTI5 1447 aa37.63■■■■□ 3.62
TSPAN9-208ENST00000640568 ERCC6Q03468 1493 aa37.57■■■■□ 3.6
TSPAN9-208ENST00000640568 KIF21AQ7Z4S6 1674 aa37.54■■■■□ 3.6
TSPAN9-208ENST00000640568 FANCD2Q9BXW9 1451 aa37.49■■■■□ 3.59
TSPAN9-208ENST00000640568 CEP164Q9UPV0 1460 aa37.42■■■■□ 3.58
TSPAN9-208ENST00000640568 MRC2Q9UBG0 1479 aa37.2■■■■□ 3.55
TSPAN9-208ENST00000640568 THOC2Q8NI27 1593 aaKnown RBP37.2■■■■□ 3.55
TSPAN9-208ENST00000640568 WDR62O43379 1518 aa37.05■■■■□ 3.52
TSPAN9-208ENST00000640568 URB2Q14146 1524 aaKnown RBP37.05■■■■□ 3.52
TSPAN9-208ENST00000640568 ABCC8Q09428 1581 aa37.02■■■■□ 3.52
TSPAN9-208ENST00000640568 DNMBPQ6XZF7 1577 aa37.01■■■■□ 3.52
TSPAN9-208ENST00000640568 TOPBP1Q92547 1522 aa36.97■■■■□ 3.51
TSPAN9-208ENST00000640568 WRNQ14191 1432 aaPredicted RBP eCLIP36.94■■■■□ 3.5
TSPAN9-208ENST00000640568 CUX1P39880 1505 aa36.92■■■■□ 3.5
TSPAN9-208ENST00000640568 CUX2O14529 1486 aa36.87■■■■□ 3.49
TSPAN9-208ENST00000640568 SYNJ1O43426 1573 aa36.82■■■■□ 3.49
TSPAN9-208ENST00000640568 BIVM-ERCC5R4GMW8 1640 aa36.82■■■■□ 3.48
TSPAN9-208ENST00000640568 TOP2BQ02880 1626 aa36.81■■■■□ 3.48
TSPAN9-208ENST00000640568 FGD5Q6ZNL6 1462 aa36.72■■■■□ 3.47
TSPAN9-208ENST00000640568 POLA1P09884 1462 aaPredicted RBP36.69■■■■□ 3.46
TSPAN9-208ENST00000640568 IFT140Q96RY7 1462 aa36.58■■■■□ 3.45
TSPAN9-208ENST00000640568 SOGA1O94964 1423 aa36.55■■■■□ 3.44
TSPAN9-208ENST00000640568 TRIM41Q8WV44 630 aa36.55■■■■□ 3.44
TSPAN9-208ENST00000640568 RAD54L2Q9Y4B4 1467 aa36.52■■■■□ 3.44
TSPAN9-208ENST00000640568 TARBP1Q13395 1621 aaKnown RBP36.51■■■■□ 3.44
TSPAN9-208ENST00000640568 CHIC1Q5VXU3 224 aa36.45■■■■□ 3.43
TSPAN9-208ENST00000640568 WDR97A6NE52 1622 aa36.41■■■■□ 3.42
TSPAN9-208ENST00000640568 ABCA10Q8WWZ4 1543 aa36.37■■■■□ 3.41
TSPAN9-208ENST00000640568 ZNF608Q9ULD9 1512 aaPredicted RBP36.33■■■■□ 3.41
TSPAN9-208ENST00000640568 EIF4G3O43432 1585 aaKnown RBP36.29■■■■□ 3.4
TSPAN9-208ENST00000640568 TDRD9Q8NDG6 1382 aaKnown RBP36.25■■■■□ 3.39
TSPAN9-208ENST00000640568 AQRO60306 1485 aaKnown RBP eCLIP36.22■■■■□ 3.39
TSPAN9-208ENST00000640568 ABCA5Q8WWZ7 1642 aa36.2■■■■□ 3.39
TSPAN9-208ENST00000640568 GAPVD1Q14C86 1478 aa36.16■■■■□ 3.38
TSPAN9-208ENST00000640568 PBRM1Q86U86 1689 aa36.14■■■■□ 3.38
TSPAN9-208ENST00000640568 KIF27Q86VH2 1401 aa36.13■■■■□ 3.37
TSPAN9-208ENST00000640568 GRIN2BQ13224 1484 aa36.06■■■■□ 3.36
TSPAN9-208ENST00000640568 ERICH3Q5RHP9 1530 aa35.98■■■■□ 3.35
TSPAN9-208ENST00000640568 RUSC2Q8N2Y8 1516 aa35.95■■■■□ 3.35
TSPAN9-208ENST00000640568 SNAPC4Q5SXM2 1469 aa35.94■■■■□ 3.34
TSPAN9-208ENST00000640568 MAGI1Q96QZ7 1491 aaPredicted RBP35.9■■■■□ 3.34
TSPAN9-208ENST00000640568 EEA1Q15075 1411 aa35.88■■■■□ 3.33
TSPAN9-208ENST00000640568 CUL7Q14999 1698 aa35.83■■■■□ 3.33
TSPAN9-208ENST00000640568 IGF1RP08069 1367 aa35.83■■■■□ 3.33
TSPAN9-208ENST00000640568 ADAMTS12P58397 1594 aa35.82■■■■□ 3.32
TSPAN9-208ENST00000640568 FAM9AQ8IZU1 332 aaPredicted RBP35.79■■■■□ 3.32
TSPAN9-208ENST00000640568 FHAD1B1AJZ9 1412 aa35.76■■■■□ 3.31
TSPAN9-208ENST00000640568 CHD1O14646 1710 aa35.75■■■■□ 3.31
TSPAN9-208ENST00000640568 SYNJ2O15056 1496 aa35.75■■■■□ 3.31
TSPAN9-208ENST00000640568 FBLN2P98095 1184 aa35.73■■■■□ 3.31
TSPAN9-208ENST00000640568 CHMP7Q8WUX9 453 aaPredicted RBP35.71■■■■□ 3.31
TSPAN9-208ENST00000640568 CSRNP3Q8WYN3 585 aa35.7■■■■□ 3.31
TSPAN9-208ENST00000640568 CARMIL1Q5VZK9 1371 aa35.68■■■■□ 3.3
TSPAN9-208ENST00000640568 GRIN2AQ12879 1464 aa35.6■■■■□ 3.29
TSPAN9-208ENST00000640568 RAPGEF2Q9Y4G8 1499 aa35.57■■■■□ 3.28
TSPAN9-208ENST00000640568 PRXQ9BXM0 1461 aa35.54■■■■□ 3.28
TSPAN9-208ENST00000640568 KIF21BO75037 1637 aa35.48■■■■□ 3.27
TSPAN9-208ENST00000640568 OSCARQ8IYS5 282 aa35.46■■■■□ 3.27
TSPAN9-208ENST00000640568 CEP170Q5SW79 1584 aa35.39■■■■□ 3.26
TSPAN9-208ENST00000640568 NUP160Q12769 1436 aa35.38■■■■□ 3.25
TSPAN9-208ENST00000640568 GOLGA3Q08378 1498 aa35.32■■■■□ 3.24
TSPAN9-208ENST00000640568 EHMT2Q96KQ7 1210 aa35.3■■■■□ 3.24
TSPAN9-208ENST00000640568 CTTNBP2Q8WZ74 1663 aa35.3■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms