RNA–Protein interactions for RNA: ENST00000640451.1

MED17-225, Transcript of mediator complex subunit 17, human

TSL 5

Gene MED17, Length 1,704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MED17-225	ENST00000640451	NISCH	Q9Y2I1	1504 aa		56.17	■■■■■ 6.58
MED17-225	ENST00000640451	CCDC180	Q9P1Z9	1646 aa		49.25	■■■■■ 5.48
MED17-225	ENST00000640451	ZCCHC6	Q5VYS8	1495 aa	Known RBP	47.13	■■■■■ 5.14
MED17-225	ENST00000640451	ABCC9	O60706	1549 aa		46.76	■■■■■ 5.08
MED17-225	ENST00000640451	DCAF1	Q9Y4B6	1507 aa		46.52	■■■■■ 5.04
MED17-225	ENST00000640451	DCAF8L2	P0C7V8	631 aa		46.28	■■■■■ 5
MED17-225	ENST00000640451	MYO15B	Q96JP2	1530 aa		46.13	■■■■■ 4.98
MED17-225	ENST00000640451	NACAD	O15069	1562 aa		45.91	■■■■■ 4.94
MED17-225	ENST00000640451	RB1CC1	Q8TDY2	1594 aa		45.59	■■■■■ 4.89
MED17-225	ENST00000640451	SHROOM4	Q9ULL8	1493 aa		45.36	■■■■■ 4.85
MED17-225	ENST00000640451	SCRIB	Q14160	1630 aa		45.12	■■■■■ 4.81
MED17-225	ENST00000640451	UNC13A	Q9UPW8	1703 aa		44.73	■■■■■ 4.75
MED17-225	ENST00000640451	BICRA	Q9NZM4	1560 aa		44.25	■■■■■ 4.67
MED17-225	ENST00000640451	PABPN1	Q86U42	306 aa	Known RBP eCLIP	43.94	■■■■■ 4.62
MED17-225	ENST00000640451	CECR2	Q9BXF3	1484 aa		43.63	■■■■■ 4.58
MED17-225	ENST00000640451	SUPT5H	O00267	1087 aa	Known RBP	43.43	■■■■■ 4.54
MED17-225	ENST00000640451	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	43.41	■■■■■ 4.54
MED17-225	ENST00000640451	RSF1	Q96T23	1441 aa	Predicted RBP	43.39	■■■■■ 4.54
MED17-225	ENST00000640451	MROH2B	Q7Z745	1585 aa		43.36	■■■■■ 4.53
MED17-225	ENST00000640451	SMARCA4	P51532	1647 aa		43.28	■■■■■ 4.52
MED17-225	ENST00000640451	WIZ	O95785	1651 aa		42.99	■■■■■ 4.47
MED17-225	ENST00000640451	EIF4G1	Q04637	1599 aa	Known RBP	42.92	■■■■■ 4.46
MED17-225	ENST00000640451	PEG3	Q9GZU2	1588 aa		42.82	■■■■■ 4.45
MED17-225	ENST00000640451	ATAD2B	Q9ULI0	1458 aa		42.64	■■■■■ 4.42
MED17-225	ENST00000640451	SMARCA2	P51531	1590 aa		42.63	■■■■■ 4.41
MED17-225	ENST00000640451	TOP2A	P11388	1531 aa	Known RBP	42.57	■■■■■ 4.4
MED17-225	ENST00000640451	CC2D2A	Q9P2K1	1620 aa		42.38	■■■■■ 4.37
MED17-225	ENST00000640451	NCAPD3	P42695	1498 aa		42.35	■■■■■ 4.37
MED17-225	ENST00000640451	BAZ1B	Q9UIG0	1483 aa	Known RBP	42.35	■■■■■ 4.37
MED17-225	ENST00000640451	HMGXB3	Q12766	1538 aa		42.31	■■■■■ 4.36
MED17-225	ENST00000640451	CCDC88B	A6NC98	1476 aa		42.07	■■■■■ 4.33
MED17-225	ENST00000640451	DNAJC5B	Q9UF47	199 aa		41.57	■■■■■ 4.25
MED17-225	ENST00000640451	CHIC1	Q5VXU3	224 aa		41.45	■■■■■ 4.23
MED17-225	ENST00000640451	CFTR	P13569	1480 aa		41.3	■■■■■ 4.2
MED17-225	ENST00000640451	CADPS	Q9ULU8	1353 aa		41.2	■■■■■ 4.19
MED17-225	ENST00000640451	PRDM2	Q13029	1718 aa		41.18	■■■■■ 4.18
MED17-225	ENST00000640451	ABCC8	Q09428	1581 aa		41.05	■■■■■ 4.16
MED17-225	ENST00000640451	LAMC3	Q9Y6N6	1575 aa		41	■■■■■ 4.15
MED17-225	ENST00000640451	NES	P48681	1621 aa		40.94	■■■■■ 4.14
MED17-225	ENST00000640451	TRIM41	Q8WV44	630 aa		40.9	■■■■■ 4.14
MED17-225	ENST00000640451	WRN	Q14191	1432 aa	Predicted RBP eCLIP	40.84	■■■■■ 4.13
MED17-225	ENST00000640451	FANCD2	Q9BXW9	1451 aa		40.75	■■■■■ 4.11
MED17-225	ENST00000640451	SYNJ1	O43426	1573 aa		40.72	■■■■■ 4.11
MED17-225	ENST00000640451	PDS5B	Q9NTI5	1447 aa		40.63	■■■■■ 4.1
MED17-225	ENST00000640451	TOP2B	Q02880	1626 aa		40.62	■■■■■ 4.09
MED17-225	ENST00000640451	BIVM-ERCC5	R4GMW8	1640 aa		40.61	■■■■■ 4.09
MED17-225	ENST00000640451	CUX1	P39880	1505 aa		40.58	■■■■■ 4.09
MED17-225	ENST00000640451	CEP164	Q9UPV0	1460 aa		40.54	■■■■■ 4.08
MED17-225	ENST00000640451	KIF21A	Q7Z4S6	1674 aa		40.53	■■■■■ 4.08
MED17-225	ENST00000640451	DNMBP	Q6XZF7	1577 aa		40.36	■■■■■ 4.05
MED17-225	ENST00000640451	URB2	Q14146	1524 aa	Known RBP	40.28	■■■■■ 4.04
MED17-225	ENST00000640451	TOPBP1	Q92547	1522 aa		40.28	■■■■■ 4.04
MED17-225	ENST00000640451	SOGA1	O94964	1423 aa		40.18	■■■■■ 4.02
MED17-225	ENST00000640451	FGD5	Q6ZNL6	1462 aa		40.17	■■■■■ 4.02
MED17-225	ENST00000640451	MRC2	Q9UBG0	1479 aa		40.16	■■■■■ 4.02
MED17-225	ENST00000640451	ERCC6	Q03468	1493 aa		40.12	■■■■■ 4.01
MED17-225	ENST00000640451	EEA1	Q15075	1411 aa		40.08	■■■■■ 4.01
MED17-225	ENST00000640451	FAM9A	Q8IZU1	332 aa	Predicted RBP	40.08	■■■■■ 4.01
MED17-225	ENST00000640451	POLA1	P09884	1462 aa	Predicted RBP	40.05	■■■■■ 4
MED17-225	ENST00000640451	RUSC2	Q8N2Y8	1516 aa		40.05	■■■■■ 4
MED17-225	ENST00000640451	WDR62	O43379	1518 aa		40	■■■■□ 3.99
MED17-225	ENST00000640451	THOC2	Q8NI27	1593 aa	Known RBP	39.99	■■■■□ 3.99
MED17-225	ENST00000640451	RAD54L2	Q9Y4B4	1467 aa		39.87	■■■■□ 3.97
MED17-225	ENST00000640451	ABCA10	Q8WWZ4	1543 aa		39.85	■■■■□ 3.97
MED17-225	ENST00000640451	KIF27	Q86VH2	1401 aa		39.84	■■■■□ 3.97
MED17-225	ENST00000640451	WDR97	A6NE52	1622 aa		39.82	■■■■□ 3.96
MED17-225	ENST00000640451	CSRNP3	Q8WYN3	585 aa		39.82	■■■■□ 3.96
MED17-225	ENST00000640451	CUX2	O14529	1486 aa		39.81	■■■■□ 3.96
MED17-225	ENST00000640451	LOC105371045	A0A1W2PR82	267 aa		39.78	■■■■□ 3.96
MED17-225	ENST00000640451	TARBP1	Q13395	1621 aa	Known RBP	39.75	■■■■□ 3.95
MED17-225	ENST00000640451	KIF21B	O75037	1637 aa		39.62	■■■■□ 3.93
MED17-225	ENST00000640451	IFT140	Q96RY7	1462 aa		39.61	■■■■□ 3.93
MED17-225	ENST00000640451	ABCA5	Q8WWZ7	1642 aa		39.59	■■■■□ 3.93
MED17-225	ENST00000640451	IGF1R	P08069	1367 aa		39.53	■■■■□ 3.92
MED17-225	ENST00000640451	PRX	Q9BXM0	1461 aa		39.52	■■■■□ 3.92
MED17-225	ENST00000640451	TDRD9	Q8NDG6	1382 aa	Known RBP	39.49	■■■■□ 3.91
MED17-225	ENST00000640451	GOLGA3	Q08378	1498 aa		39.48	■■■■□ 3.91
MED17-225	ENST00000640451	GAPVD1	Q14C86	1478 aa		39.46	■■■■□ 3.91
MED17-225	ENST00000640451	EHMT2	Q96KQ7	1210 aa		39.45	■■■■□ 3.91
MED17-225	ENST00000640451	ERICH3	Q5RHP9	1530 aa		39.42	■■■■□ 3.9
MED17-225	ENST00000640451	RAPGEF2	Q9Y4G8	1499 aa		39.4	■■■■□ 3.9
MED17-225	ENST00000640451	ZNF608	Q9ULD9	1512 aa	Predicted RBP	39.37	■■■■□ 3.89
MED17-225	ENST00000640451	CUL7	Q14999	1698 aa		39.33	■■■■□ 3.89
MED17-225	ENST00000640451	PBRM1	Q86U86	1689 aa		39.33	■■■■□ 3.89
MED17-225	ENST00000640451	AQR	O60306	1485 aa	Known RBP eCLIP	39.33	■■■■□ 3.89	4e-7	■■■□□ 16.8
MED17-225	ENST00000640451	CARMIL1	Q5VZK9	1371 aa		39.31	■■■■□ 3.88
MED17-225	ENST00000640451	EIF4G3	O43432	1585 aa	Known RBP	39.29	■■■■□ 3.88
MED17-225	ENST00000640451	TNIK	Q9UKE5	1360 aa		39.28	■■■■□ 3.88
MED17-225	ENST00000640451	GRIN2B	Q13224	1484 aa		39.22	■■■■□ 3.87
MED17-225	ENST00000640451	UBTF	P17480	764 aa	Known RBP	39.2	■■■■□ 3.87
MED17-225	ENST00000640451	ADAMTS12	P58397	1594 aa		39.08	■■■■□ 3.85
MED17-225	ENST00000640451	FHAD1	B1AJZ9	1412 aa		39.03	■■■■□ 3.84
MED17-225	ENST00000640451	CEP162	Q5TB80	1403 aa		39.02	■■■■□ 3.84
MED17-225	ENST00000640451	SNAPC4	Q5SXM2	1469 aa		38.99	■■■■□ 3.83
MED17-225	ENST00000640451	MAGI1	Q96QZ7	1491 aa	Predicted RBP	38.96	■■■■□ 3.83
MED17-225	ENST00000640451	CTTNBP2	Q8WZ74	1663 aa		38.85	■■■■□ 3.81
MED17-225	ENST00000640451	CLIP1	P30622	1438 aa		38.81	■■■■□ 3.8
MED17-225	ENST00000640451	SYNJ2	O15056	1496 aa		38.79	■■■■□ 3.8
MED17-225	ENST00000640451	GRIN2A	Q12879	1464 aa		38.75	■■■■□ 3.79
MED17-225	ENST00000640451	CHMP7	Q8WUX9	453 aa	Predicted RBP	38.62	■■■■□ 3.77

Retrieved 100 of 20,778 RNA–protein pairs in 95 ms