RNA–Protein interactions for RNA: ENST00000639715.1

SCARB2-218, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 4,355 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-218ENST00000639715 NISCHQ9Y2I1 1504 aa10.35□□□□□ -0.75
SCARB2-218ENST00000639715 PELP1Q8IZL8 1130 aaKnown RBP9.79□□□□□ -0.84
SCARB2-218ENST00000639715 CCDC180Q9P1Z9 1646 aa9.64□□□□□ -0.87
SCARB2-218ENST00000639715 MYT1Q01538 1121 aa9.63□□□□□ -0.87
SCARB2-218ENST00000639715 DCAF8L2P0C7V8 631 aa9.42□□□□□ -0.9
SCARB2-218ENST00000639715 SHROOM4Q9ULL8 1493 aa9.33□□□□□ -0.92
SCARB2-218ENST00000639715 DNAJC5Q9H3Z4 198 aa9.32□□□□□ -0.92
SCARB2-218ENST00000639715 SUPT5HO00267 1087 aaKnown RBP9.29□□□□□ -0.92
SCARB2-218ENST00000639715 ABCC9O60706 1549 aa9.22□□□□□ -0.93
SCARB2-218ENST00000639715 HRCP23327 699 aa9.17□□□□□ -0.94
SCARB2-218ENST00000639715 DNAJC5BQ9UF47 199 aa9.17□□□□□ -0.94
SCARB2-218ENST00000639715 RB1CC1Q8TDY2 1594 aa9.16□□□□□ -0.94
SCARB2-218ENST00000639715 MYO15BQ96JP2 1530 aa9.07□□□□□ -0.96
SCARB2-218ENST00000639715 NACADO15069 1562 aa9.05□□□□□ -0.96
SCARB2-218ENST00000639715 TTBK1Q5TCY1 1321 aaPredicted RBP9.03□□□□□ -0.96
SCARB2-218ENST00000639715 PPARGC1BQ86YN6 1023 aaKnown RBP9.02□□□□□ -0.97
SCARB2-218ENST00000639715 PCGF6Q9BYE7 350 aa9.02□□□□□ -0.97
SCARB2-218ENST00000639715 CUX2O14529 1486 aa9□□□□□ -0.97
SCARB2-218ENST00000639715 UNC13AQ9UPW8 1703 aa8.99□□□□□ -0.97
SCARB2-218ENST00000639715 BICRAQ9NZM4 1560 aa8.88□□□□□ -0.99
SCARB2-218ENST00000639715 SCAF1Q9H7N4 1312 aaKnown RBP8.86□□□□□ -0.99
SCARB2-218ENST00000639715 CENPBP07199 599 aaPredicted RBP8.84□□□□□ -0.99
SCARB2-218ENST00000639715 ERICH6Q7L0X2 663 aa8.79□□□□□ -1
SCARB2-218ENST00000639715 BCL11AQ9H165 835 aa8.74□□□□□ -1.01
SCARB2-218ENST00000639715 CC2D2AQ9P2K1 1620 aa8.73□□□□□ -1.01
SCARB2-218ENST00000639715 CHIC1Q5VXU3 224 aa8.73□□□□□ -1.01
SCARB2-218ENST00000639715 GTF3C3Q9Y5Q9 886 aa8.72□□□□□ -1.01
SCARB2-218ENST00000639715 ZEB1P37275 1124 aaPredicted RBP8.7□□□□□ -1.02
SCARB2-218ENST00000639715 TRIM41Q8WV44 630 aa8.7□□□□□ -1.02
SCARB2-218ENST00000639715 ZCCHC6Q5VYS8 1495 aaKnown RBP8.67□□□□□ -1.02
SCARB2-218ENST00000639715 ACIN1Q9UKV3 1341 aaKnown RBP8.66□□□□□ -1.02
SCARB2-218ENST00000639715 CECR2Q9BXF3 1484 aa8.65□□□□□ -1.02
SCARB2-218ENST00000639715 PRKCSHP14314 528 aaPredicted RBP8.64□□□□□ -1.03
SCARB2-218ENST00000639715 FAM9AQ8IZU1 332 aaPredicted RBP8.64□□□□□ -1.03
SCARB2-218ENST00000639715 EHMT2Q96KQ7 1210 aa8.61□□□□□ -1.03
SCARB2-218ENST00000639715 EIF4G1Q04637 1599 aaKnown RBP8.6□□□□□ -1.03
SCARB2-218ENST00000639715 TRIM26Q12899 539 aaPredicted RBP8.59□□□□□ -1.04
SCARB2-218ENST00000639715 NEUROD1Q13562 356 aa8.56□□□□□ -1.04
SCARB2-218ENST00000639715 DCAF1Q9Y4B6 1507 aa8.56□□□□□ -1.04
SCARB2-218ENST00000639715 YTHDC1Q96MU7 727 aaKnown RBP8.54□□□□□ -1.04
SCARB2-218ENST00000639715 APLP2Q06481 763 aa8.53□□□□□ -1.04
SCARB2-218ENST00000639715 LOC105371045A0A1W2PR82 267 aa8.52□□□□□ -1.05
SCARB2-218ENST00000639715 ANP32EQ9BTT0 268 aa8.45□□□□□ -1.06
SCARB2-218ENST00000639715 THOC2Q8NI27 1593 aaKnown RBP8.45□□□□□ -1.06
SCARB2-218ENST00000639715 CCER1Q8TC90 406 aaPredicted RBP8.45□□□□□ -1.06
SCARB2-218ENST00000639715 UBTFP17480 764 aaKnown RBP8.41□□□□□ -1.06
SCARB2-218ENST00000639715 DIEXFQ68CQ4 756 aaKnown RBP8.39□□□□□ -1.07
SCARB2-218ENST00000639715 CSRNP3Q8WYN3 585 aa8.33□□□□□ -1.08
SCARB2-218ENST00000639715 SCRIBQ14160 1630 aa8.29□□□□□ -1.08
SCARB2-218ENST00000639715 HMGXB3Q12766 1538 aa8.27□□□□□ -1.09
SCARB2-218ENST00000639715 RANGAP1P46060 587 aaPredicted RBP8.24□□□□□ -1.09
SCARB2-218ENST00000639715 LAMC3Q9Y6N6 1575 aa8.24□□□□□ -1.09
SCARB2-218ENST00000639715 RSF1Q96T23 1441 aaPredicted RBP8.24□□□□□ -1.09
SCARB2-218ENST00000639715 NCAPD3P42695 1498 aa8.21□□□□□ -1.09
SCARB2-218ENST00000639715 BAZ1AQ9NRL2 1556 aaPredicted RBP8.21□□□□□ -1.1
SCARB2-218ENST00000639715 SLC24A1O60721 1099 aa8.21□□□□□ -1.1
SCARB2-218ENST00000639715 SMARCA2P51531 1590 aa8.2□□□□□ -1.1
SCARB2-218ENST00000639715 EIF5BO60841 1220 aaKnown RBP8.2□□□□□ -1.1
SCARB2-218ENST00000639715 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.19□□□□□ -1.1
SCARB2-218ENST00000639715 WDR62O43379 1518 aa8.18□□□□□ -1.1
SCARB2-218ENST00000639715 NEFLP07196 543 aa8.16□□□□□ -1.1
SCARB2-218ENST00000639715 BCANQ96GW7 911 aa8.16□□□□□ -1.1
SCARB2-218ENST00000639715 RIMBP3CA6NJZ7 1639 aa8.15□□□□□ -1.1
SCARB2-218ENST00000639715 RIMBP3BA6NNM3 1639 aa8.15□□□□□ -1.1
SCARB2-218ENST00000639715 RIMBP3Q9UFD9 1639 aa8.15□□□□□ -1.1
SCARB2-218ENST00000639715 ANO8Q9HCE9 1232 aaPredicted RBP8.15□□□□□ -1.1
SCARB2-218ENST00000639715 PABPN1Q86U42 306 aaKnown RBP eCLIP8.15□□□□□ -1.11
SCARB2-218ENST00000639715 HNRNPUL2Q1KMD3 747 aaKnown RBP8.14□□□□□ -1.11
SCARB2-218ENST00000639715 PEG3Q9GZU2 1588 aa8.13□□□□□ -1.11
SCARB2-218ENST00000639715 MYT1LQ9UL68 1186 aa8.11□□□□□ -1.11
SCARB2-218ENST00000639715 ATP1B4Q9UN42 357 aaPredicted RBP8.11□□□□□ -1.11
SCARB2-218ENST00000639715 ERCC6Q03468 1493 aa8.1□□□□□ -1.11
SCARB2-218ENST00000639715 CCDC136Q96JN2 1154 aa8.1□□□□□ -1.11
SCARB2-218ENST00000639715 TSHZ2Q9NRE2 1034 aa8.1□□□□□ -1.11
SCARB2-218ENST00000639715 RTL5Q5HYW3 569 aaPredicted RBP8.08□□□□□ -1.12
SCARB2-218ENST00000639715 EEA1Q15075 1411 aa8.08□□□□□ -1.12
SCARB2-218ENST00000639715 CLSPNQ9HAW4 1339 aa8.08□□□□□ -1.12
SCARB2-218ENST00000639715 ZNF316A6NFI3 1004 aaPredicted RBP8.07□□□□□ -1.12
SCARB2-218ENST00000639715 SUPT16HQ9Y5B9 1047 aaKnown RBP8.04□□□□□ -1.12
SCARB2-218ENST00000639715 KIF21AQ7Z4S6 1674 aa8.04□□□□□ -1.12
SCARB2-218ENST00000639715 DEKP35659 375 aaKnown RBP8.03□□□□□ -1.12
SCARB2-218ENST00000639715 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.03□□□□□ -1.12
SCARB2-218ENST00000639715 RTN4Q9NQC3 1192 aaKnown RBP8.03□□□□□ -1.12
SCARB2-218ENST00000639715 GLIPR1L2Q4G1C9 344 aa8.02□□□□□ -1.13
SCARB2-218ENST00000639715 MIER1Q8N108 512 aa8.02□□□□□ -1.13
SCARB2-218ENST00000639715 ITGAEP38570 1179 aa8.01□□□□□ -1.13
SCARB2-218ENST00000639715 ERCC6L2Q5T890 1561 aa8□□□□□ -1.13
SCARB2-218ENST00000639715 WDR97A6NE52 1622 aa8□□□□□ -1.13
SCARB2-218ENST00000639715 TNIKQ9UKE5 1360 aa7.99□□□□□ -1.13
SCARB2-218ENST00000639715 SALL2Q9Y467 1007 aaPredicted RBP7.99□□□□□ -1.13
SCARB2-218ENST00000639715 MROH2BQ7Z745 1585 aa7.99□□□□□ -1.13
SCARB2-218ENST00000639715 NBR1Q14596 966 aa7.99□□□□□ -1.13
SCARB2-218ENST00000639715 CEP162Q5TB80 1403 aa7.98□□□□□ -1.13
SCARB2-218ENST00000639715 MRC2Q9UBG0 1479 aa7.98□□□□□ -1.13
SCARB2-218ENST00000639715 GOLGA3Q08378 1498 aa7.97□□□□□ -1.13
SCARB2-218ENST00000639715 FKBP8Q14318 412 aa7.97□□□□□ -1.13
SCARB2-218ENST00000639715 RBM19Q9Y4C8 960 aaKnown RBP7.97□□□□□ -1.13
SCARB2-218ENST00000639715 PKNOX2Q96KN3 472 aa7.96□□□□□ -1.13
SCARB2-218ENST00000639715 CDK11AQ9UQ88 783 aaPredicted RBP7.96□□□□□ -1.14
SCARB2-218ENST00000639715 UBE2Q2Q8WVN8 375 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms