RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 NISCHQ9Y2I1 1504 aa43.89■■■■■ 4.62
PNKP-230ENST00000638016 CCDC180Q9P1Z9 1646 aa39.14■■■■□ 3.86
PNKP-230ENST00000638016 ABCC9O60706 1549 aa38.83■■■■□ 3.81
PNKP-230ENST00000638016 RB1CC1Q8TDY2 1594 aa37.04■■■■□ 3.52
PNKP-230ENST00000638016 NACADO15069 1562 aa36.88■■■■□ 3.49
PNKP-230ENST00000638016 DCAF8L2P0C7V8 631 aa36.88■■■■□ 3.49
PNKP-230ENST00000638016 ZCCHC6Q5VYS8 1495 aaKnown RBP36.5■■■■□ 3.43
PNKP-230ENST00000638016 MYO15BQ96JP2 1530 aa36.47■■■■□ 3.43
PNKP-230ENST00000638016 UNC13AQ9UPW8 1703 aa36.35■■■■□ 3.41
PNKP-230ENST00000638016 PABPN1Q86U42 306 aaKnown RBP eCLIP36.23■■■■□ 3.39
PNKP-230ENST00000638016 DCAF1Q9Y4B6 1507 aa36.2■■■■□ 3.39
PNKP-230ENST00000638016 DNAJC5BQ9UF47 199 aa36.05■■■■□ 3.36
PNKP-230ENST00000638016 BICRAQ9NZM4 1560 aa36.05■■■■□ 3.36
PNKP-230ENST00000638016 SCRIBQ14160 1630 aa35.83■■■■□ 3.33
PNKP-230ENST00000638016 SHROOM4Q9ULL8 1493 aa35.41■■■■□ 3.26
PNKP-230ENST00000638016 EIF4G1Q04637 1599 aaKnown RBP35.09■■■■□ 3.21
PNKP-230ENST00000638016 CC2D2AQ9P2K1 1620 aa35.07■■■■□ 3.21
PNKP-230ENST00000638016 CECR2Q9BXF3 1484 aa34.87■■■■□ 3.17
PNKP-230ENST00000638016 SMARCA4P51532 1647 aa34.17■■■■□ 3.06
PNKP-230ENST00000638016 ATAD2BQ9ULI0 1458 aa34.07■■■■□ 3.05
PNKP-230ENST00000638016 NCAPD3P42695 1498 aa34.05■■■■□ 3.04
PNKP-230ENST00000638016 BAZ1AQ9NRL2 1556 aaPredicted RBP34.01■■■■□ 3.03
PNKP-230ENST00000638016 SMARCA2P51531 1590 aa33.94■■■■□ 3.02
PNKP-230ENST00000638016 MROH2BQ7Z745 1585 aa33.89■■■■□ 3.02
PNKP-230ENST00000638016 HMGXB3Q12766 1538 aa33.85■■■■□ 3.01
PNKP-230ENST00000638016 PEG3Q9GZU2 1588 aa33.77■■■■□ 3
PNKP-230ENST00000638016 BAZ1BQ9UIG0 1483 aaKnown RBP33.76■■■□□ 2.99
PNKP-230ENST00000638016 WIZO95785 1651 aa33.53■■■□□ 2.96
PNKP-230ENST00000638016 NESP48681 1621 aa33.52■■■□□ 2.96
PNKP-230ENST00000638016 ERCC6Q03468 1493 aa33.42■■■□□ 2.94
PNKP-230ENST00000638016 RSF1Q96T23 1441 aaPredicted RBP33.31■■■□□ 2.92
PNKP-230ENST00000638016 LAMC3Q9Y6N6 1575 aa33.21■■■□□ 2.91
PNKP-230ENST00000638016 CUX2O14529 1486 aa33.15■■■□□ 2.9
PNKP-230ENST00000638016 KIF21AQ7Z4S6 1674 aa33.09■■■□□ 2.89
PNKP-230ENST00000638016 TOP2AP11388 1531 aaKnown RBP33.07■■■□□ 2.88
PNKP-230ENST00000638016 CADPSQ9ULU8 1353 aa33.05■■■□□ 2.88
PNKP-230ENST00000638016 THOC2Q8NI27 1593 aaKnown RBP33.04■■■□□ 2.88
PNKP-230ENST00000638016 PDS5BQ9NTI5 1447 aa32.97■■■□□ 2.87
PNKP-230ENST00000638016 CFTRP13569 1480 aa32.78■■■□□ 2.84
PNKP-230ENST00000638016 MRC2Q9UBG0 1479 aa32.74■■■□□ 2.83
PNKP-230ENST00000638016 FANCD2Q9BXW9 1451 aa32.72■■■□□ 2.83
PNKP-230ENST00000638016 CCDC88BA6NC98 1476 aa32.7■■■□□ 2.83
PNKP-230ENST00000638016 CEP164Q9UPV0 1460 aa32.69■■■□□ 2.82
PNKP-230ENST00000638016 WDR62O43379 1518 aa32.65■■■□□ 2.82
PNKP-230ENST00000638016 DNAJC5Q9H3Z4 198 aa32.63■■■□□ 2.81
PNKP-230ENST00000638016 PRDM2Q13029 1718 aa32.53■■■□□ 2.8
PNKP-230ENST00000638016 URB2Q14146 1524 aaKnown RBP32.46■■■□□ 2.79
PNKP-230ENST00000638016 SUPT5HO00267 1087 aaKnown RBP32.22■■■□□ 2.75
PNKP-230ENST00000638016 TOPBP1Q92547 1522 aa32.16■■■□□ 2.74
PNKP-230ENST00000638016 DNMBPQ6XZF7 1577 aa32.07■■■□□ 2.72
PNKP-230ENST00000638016 ZNF608Q9ULD9 1512 aaPredicted RBP32.01■■■□□ 2.72
PNKP-230ENST00000638016 IFT140Q96RY7 1462 aa32■■■□□ 2.71
PNKP-230ENST00000638016 ABCC8Q09428 1581 aa31.98■■■□□ 2.71
PNKP-230ENST00000638016 POLA1P09884 1462 aaPredicted RBP31.87■■■□□ 2.69
PNKP-230ENST00000638016 TARBP1Q13395 1621 aaKnown RBP31.86■■■□□ 2.69
PNKP-230ENST00000638016 EIF4G3O43432 1585 aaKnown RBP31.84■■■□□ 2.69
PNKP-230ENST00000638016 CUX1P39880 1505 aa31.81■■■□□ 2.68
PNKP-230ENST00000638016 RAD54L2Q9Y4B4 1467 aa31.79■■■□□ 2.68
PNKP-230ENST00000638016 AQRO60306 1485 aaKnown RBP eCLIP31.75■■■□□ 2.67
PNKP-230ENST00000638016 FGD5Q6ZNL6 1462 aa31.75■■■□□ 2.67
PNKP-230ENST00000638016 SOGA1O94964 1423 aa31.69■■■□□ 2.66
PNKP-230ENST00000638016 OSCARQ8IYS5 282 aa31.69■■■□□ 2.66
PNKP-230ENST00000638016 TDRD9Q8NDG6 1382 aaKnown RBP31.62■■■□□ 2.65
PNKP-230ENST00000638016 CHD1O14646 1710 aa31.54■■■□□ 2.64
PNKP-230ENST00000638016 WDR97A6NE52 1622 aa31.52■■■□□ 2.64
PNKP-230ENST00000638016 TRIM41Q8WV44 630 aa31.49■■■□□ 2.63
PNKP-230ENST00000638016 SNAPC4Q5SXM2 1469 aa31.44■■■□□ 2.62
PNKP-230ENST00000638016 SYNJ1O43426 1573 aa31.43■■■□□ 2.62
PNKP-230ENST00000638016 FBLN2P98095 1184 aa31.42■■■□□ 2.62
PNKP-230ENST00000638016 WRNQ14191 1432 aaPredicted RBP eCLIP31.4■■■□□ 2.62
PNKP-230ENST00000638016 BIVM-ERCC5R4GMW8 1640 aa31.38■■■□□ 2.61
PNKP-230ENST00000638016 TOP2BQ02880 1626 aa31.37■■■□□ 2.61
PNKP-230ENST00000638016 RIMBP3CA6NJZ7 1639 aa31.36■■■□□ 2.61
PNKP-230ENST00000638016 RIMBP3BA6NNM3 1639 aa31.36■■■□□ 2.61
PNKP-230ENST00000638016 RIMBP3Q9UFD9 1639 aa31.36■■■□□ 2.61
PNKP-230ENST00000638016 ABCA10Q8WWZ4 1543 aa31.36■■■□□ 2.61
PNKP-230ENST00000638016 GRIN2BQ13224 1484 aa31.35■■■□□ 2.61
PNKP-230ENST00000638016 PBRM1Q86U86 1689 aa31.35■■■□□ 2.61
PNKP-230ENST00000638016 ABCA5Q8WWZ7 1642 aa31.32■■■□□ 2.6
PNKP-230ENST00000638016 GAPVD1Q14C86 1478 aa31.32■■■□□ 2.6
PNKP-230ENST00000638016 MAGI1Q96QZ7 1491 aaPredicted RBP31.29■■■□□ 2.6
PNKP-230ENST00000638016 ARHGEF11O15085 1522 aa31.29■■■□□ 2.6
PNKP-230ENST00000638016 CHMP7Q8WUX9 453 aaPredicted RBP31.2■■■□□ 2.59
PNKP-230ENST00000638016 SYNJ2O15056 1496 aa31.2■■■□□ 2.58
PNKP-230ENST00000638016 CLASP1Q7Z460 1538 aa31.14■■■□□ 2.58
PNKP-230ENST00000638016 ADAMTS12P58397 1594 aa31.06■■■□□ 2.56
PNKP-230ENST00000638016 ARAP1Q96P48 1450 aa31.04■■■□□ 2.56
PNKP-230ENST00000638016 CYB5RLQ6IPT4 315 aa31.01■■■□□ 2.55
PNKP-230ENST00000638016 GRIN2AQ12879 1464 aa30.99■■■□□ 2.55
PNKP-230ENST00000638016 ERICH3Q5RHP9 1530 aa30.95■■■□□ 2.55
PNKP-230ENST00000638016 FHAD1B1AJZ9 1412 aa30.92■■■□□ 2.54
PNKP-230ENST00000638016 CEP170Q5SW79 1584 aa30.92■■■□□ 2.54
PNKP-230ENST00000638016 NUP160Q12769 1436 aa30.85■■■□□ 2.53
PNKP-230ENST00000638016 ERCC6L2Q5T890 1561 aa30.79■■■□□ 2.52
PNKP-230ENST00000638016 KIF27Q86VH2 1401 aa30.73■■■□□ 2.51
PNKP-230ENST00000638016 IGF1RP08069 1367 aa30.69■■■□□ 2.5
PNKP-230ENST00000638016 SHROOM2Q13796 1616 aa30.68■■■□□ 2.5
PNKP-230ENST00000638016 RUSC2Q8N2Y8 1516 aa30.62■■■□□ 2.49
PNKP-230ENST00000638016 CUL7Q14999 1698 aa30.6■■■□□ 2.49
PNKP-230ENST00000638016 PRG4Q92954 1404 aaPredicted RBP30.53■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms