RNA–Protein interactions for RNA: ENST00000636214.1

PNKP-225, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 805 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-225ENST00000636214 NISCHQ9Y2I1 1504 aa44.22■■■■■ 4.67
PNKP-225ENST00000636214 CCDC180Q9P1Z9 1646 aa39.61■■■■□ 3.93
PNKP-225ENST00000636214 ABCC9O60706 1549 aa39.31■■■■□ 3.88
PNKP-225ENST00000636214 RB1CC1Q8TDY2 1594 aa37.59■■■■□ 3.61
PNKP-225ENST00000636214 NACADO15069 1562 aa37.38■■■■□ 3.57
PNKP-225ENST00000636214 DCAF8L2P0C7V8 631 aa37.33■■■■□ 3.57
PNKP-225ENST00000636214 MYO15BQ96JP2 1530 aa36.92■■■■□ 3.5
PNKP-225ENST00000636214 ZCCHC6Q5VYS8 1495 aaKnown RBP36.71■■■■□ 3.47
PNKP-225ENST00000636214 UNC13AQ9UPW8 1703 aa36.65■■■■□ 3.46
PNKP-225ENST00000636214 PABPN1Q86U42 306 aaKnown RBP eCLIP36.63■■■■□ 3.455e-6■■■■□ 22.2
PNKP-225ENST00000636214 DCAF1Q9Y4B6 1507 aa36.55■■■■□ 3.44
PNKP-225ENST00000636214 DNAJC5BQ9UF47 199 aa36.47■■■■□ 3.43
PNKP-225ENST00000636214 BICRAQ9NZM4 1560 aa36.35■■■■□ 3.41
PNKP-225ENST00000636214 SCRIBQ14160 1630 aa36.12■■■■□ 3.37
PNKP-225ENST00000636214 SHROOM4Q9ULL8 1493 aa36.03■■■■□ 3.36
PNKP-225ENST00000636214 EIF4G1Q04637 1599 aaKnown RBP35.51■■■■□ 3.28
PNKP-225ENST00000636214 CC2D2AQ9P2K1 1620 aa35.51■■■■□ 3.28
PNKP-225ENST00000636214 CECR2Q9BXF3 1484 aa35.4■■■■□ 3.26
PNKP-225ENST00000636214 SMARCA4P51532 1647 aa34.46■■■■□ 3.11
PNKP-225ENST00000636214 NCAPD3P42695 1498 aa34.45■■■■□ 3.1
PNKP-225ENST00000636214 SMARCA2P51531 1590 aa34.4■■■■□ 3.1
PNKP-225ENST00000636214 ATAD2BQ9ULI0 1458 aa34.39■■■■□ 3.1
PNKP-225ENST00000636214 BAZ1AQ9NRL2 1556 aaPredicted RBP34.36■■■■□ 3.09
PNKP-225ENST00000636214 HMGXB3Q12766 1538 aa34.27■■■■□ 3.08
PNKP-225ENST00000636214 BAZ1BQ9UIG0 1483 aaKnown RBP34.16■■■■□ 3.06
PNKP-225ENST00000636214 PEG3Q9GZU2 1588 aa34.08■■■■□ 3.05
PNKP-225ENST00000636214 MROH2BQ7Z745 1585 aa34.06■■■■□ 3.04
PNKP-225ENST00000636214 ERCC6Q03468 1493 aa34.02■■■■□ 3.04
PNKP-225ENST00000636214 NESP48681 1621 aa33.8■■■■□ 3
PNKP-225ENST00000636214 CUX2O14529 1486 aa33.8■■■■□ 3
PNKP-225ENST00000636214 LAMC3Q9Y6N6 1575 aa33.68■■■□□ 2.98
PNKP-225ENST00000636214 WIZO95785 1651 aa33.68■■■□□ 2.98
PNKP-225ENST00000636214 PDS5BQ9NTI5 1447 aa33.52■■■□□ 2.96
PNKP-225ENST00000636214 RSF1Q96T23 1441 aaPredicted RBP33.46■■■□□ 2.95
PNKP-225ENST00000636214 CADPSQ9ULU8 1353 aa33.46■■■□□ 2.95
PNKP-225ENST00000636214 THOC2Q8NI27 1593 aaKnown RBP33.43■■■□□ 2.94
PNKP-225ENST00000636214 KIF21AQ7Z4S6 1674 aa33.42■■■□□ 2.94
PNKP-225ENST00000636214 DNAJC5Q9H3Z4 198 aa33.37■■■□□ 2.93
PNKP-225ENST00000636214 TOP2AP11388 1531 aaKnown RBP33.32■■■□□ 2.92
PNKP-225ENST00000636214 MRC2Q9UBG0 1479 aa33.18■■■□□ 2.9
PNKP-225ENST00000636214 CEP164Q9UPV0 1460 aa33.13■■■□□ 2.89
PNKP-225ENST00000636214 CFTRP13569 1480 aa33.11■■■□□ 2.89
PNKP-225ENST00000636214 FANCD2Q9BXW9 1451 aa33.09■■■□□ 2.89
PNKP-225ENST00000636214 WDR62O43379 1518 aa33.05■■■□□ 2.88
PNKP-225ENST00000636214 CCDC88BA6NC98 1476 aa32.9■■■□□ 2.86
PNKP-225ENST00000636214 PRDM2Q13029 1718 aa32.87■■■□□ 2.85
PNKP-225ENST00000636214 URB2Q14146 1524 aaKnown RBP32.75■■■□□ 2.83
PNKP-225ENST00000636214 ABCC8Q09428 1581 aa32.49■■■□□ 2.79
PNKP-225ENST00000636214 TOPBP1Q92547 1522 aa32.48■■■□□ 2.79
PNKP-225ENST00000636214 IFT140Q96RY7 1462 aa32.45■■■□□ 2.79
PNKP-225ENST00000636214 DNMBPQ6XZF7 1577 aa32.41■■■□□ 2.78
PNKP-225ENST00000636214 OSCARQ8IYS5 282 aa32.32■■■□□ 2.76
PNKP-225ENST00000636214 SUPT5HO00267 1087 aaKnown RBP32.31■■■□□ 2.76
PNKP-225ENST00000636214 ZNF608Q9ULD9 1512 aaPredicted RBP32.29■■■□□ 2.76
PNKP-225ENST00000636214 EIF4G3O43432 1585 aaKnown RBP32.18■■■□□ 2.74
PNKP-225ENST00000636214 POLA1P09884 1462 aaPredicted RBP32.16■■■□□ 2.74
PNKP-225ENST00000636214 TRIM41Q8WV44 630 aa32.13■■■□□ 2.73
PNKP-225ENST00000636214 TARBP1Q13395 1621 aaKnown RBP32.12■■■□□ 2.73
PNKP-225ENST00000636214 AQRO60306 1485 aaKnown RBP eCLIP32.06■■■□□ 2.723e-7■■■■□ 20.5
PNKP-225ENST00000636214 SOGA1O94964 1423 aa32.04■■■□□ 2.72
PNKP-225ENST00000636214 FGD5Q6ZNL6 1462 aa32.02■■■□□ 2.72
PNKP-225ENST00000636214 RAD54L2Q9Y4B4 1467 aa32.02■■■□□ 2.72
PNKP-225ENST00000636214 CUX1P39880 1505 aa32■■■□□ 2.71
PNKP-225ENST00000636214 TDRD9Q8NDG6 1382 aaKnown RBP31.93■■■□□ 2.7
PNKP-225ENST00000636214 WDR97A6NE52 1622 aa31.91■■■□□ 2.7
PNKP-225ENST00000636214 FBLN2P98095 1184 aa31.91■■■□□ 2.7
PNKP-225ENST00000636214 CHD1O14646 1710 aa31.89■■■□□ 2.7
PNKP-225ENST00000636214 RIMBP3CA6NJZ7 1639 aa31.82■■■□□ 2.68
PNKP-225ENST00000636214 RIMBP3BA6NNM3 1639 aa31.82■■■□□ 2.68
PNKP-225ENST00000636214 RIMBP3Q9UFD9 1639 aa31.82■■■□□ 2.68
PNKP-225ENST00000636214 SNAPC4Q5SXM2 1469 aa31.78■■■□□ 2.68
PNKP-225ENST00000636214 ARHGEF11O15085 1522 aa31.75■■■□□ 2.67
PNKP-225ENST00000636214 GRIN2BQ13224 1484 aa31.75■■■□□ 2.67
PNKP-225ENST00000636214 MAGI1Q96QZ7 1491 aaPredicted RBP31.73■■■□□ 2.67
PNKP-225ENST00000636214 CHMP7Q8WUX9 453 aaPredicted RBP31.7■■■□□ 2.67
PNKP-225ENST00000636214 GAPVD1Q14C86 1478 aa31.67■■■□□ 2.66
PNKP-225ENST00000636214 ABCA10Q8WWZ4 1543 aa31.67■■■□□ 2.66
PNKP-225ENST00000636214 PBRM1Q86U86 1689 aa31.64■■■□□ 2.66
PNKP-225ENST00000636214 WRNQ14191 1432 aaPredicted RBP eCLIP31.64■■■□□ 2.66
PNKP-225ENST00000636214 SYNJ2O15056 1496 aa31.6■■■□□ 2.65
PNKP-225ENST00000636214 TOP2BQ02880 1626 aa31.6■■■□□ 2.65
PNKP-225ENST00000636214 BIVM-ERCC5R4GMW8 1640 aa31.6■■■□□ 2.65
PNKP-225ENST00000636214 SYNJ1O43426 1573 aa31.6■■■□□ 2.65
PNKP-225ENST00000636214 ABCA5Q8WWZ7 1642 aa31.57■■■□□ 2.64
PNKP-225ENST00000636214 CYB5RLQ6IPT4 315 aa31.52■■■□□ 2.64
PNKP-225ENST00000636214 CLASP1Q7Z460 1538 aa31.49■■■□□ 2.63
PNKP-225ENST00000636214 ARAP1Q96P48 1450 aa31.44■■■□□ 2.62
PNKP-225ENST00000636214 ADAMTS12P58397 1594 aa31.34■■■□□ 2.61
PNKP-225ENST00000636214 GRIN2AQ12879 1464 aa31.32■■■□□ 2.6
PNKP-225ENST00000636214 ERICH3Q5RHP9 1530 aa31.3■■■□□ 2.6
PNKP-225ENST00000636214 FHAD1B1AJZ9 1412 aa31.29■■■□□ 2.6
PNKP-225ENST00000636214 NUP160Q12769 1436 aa31.17■■■□□ 2.58
PNKP-225ENST00000636214 TRHP20396 242 aaPredicted RBP31.16■■■□□ 2.58
PNKP-225ENST00000636214 CEP170Q5SW79 1584 aa31.16■■■□□ 2.58
PNKP-225ENST00000636214 KIF27Q86VH2 1401 aa31.05■■■□□ 2.56
PNKP-225ENST00000636214 SHROOM2Q13796 1616 aa30.99■■■□□ 2.55
PNKP-225ENST00000636214 ERCC6L2Q5T890 1561 aa30.98■■■□□ 2.55
PNKP-225ENST00000636214 CUL7Q14999 1698 aa30.93■■■□□ 2.54
PNKP-225ENST00000636214 IGF1RP08069 1367 aa30.91■■■□□ 2.54
PNKP-225ENST00000636214 PRG4Q92954 1404 aaPredicted RBP30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms