RNA–Protein interactions for RNA: ENST00000629346.2

CHD2-218, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5 BASIC

Gene CHD2, Length 1,249 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-218ENST00000629346 NISCHQ9Y2I1 1504 aa30.68■■■□□ 2.5
CHD2-218ENST00000629346 ABCC9O60706 1549 aa28.64■■■□□ 2.18
CHD2-218ENST00000629346 CCDC180Q9P1Z9 1646 aa27.76■■■□□ 2.03
CHD2-218ENST00000629346 DNAJC5BQ9UF47 199 aa27.55■■■□□ 2
CHD2-218ENST00000629346 RB1CC1Q8TDY2 1594 aa26.84■■□□□ 1.89
CHD2-218ENST00000629346 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.85
CHD2-218ENST00000629346 NACADO15069 1562 aa26.46■■□□□ 1.83
CHD2-218ENST00000629346 DCAF8L2P0C7V8 631 aa26.45■■□□□ 1.82
CHD2-218ENST00000629346 UNC13AQ9UPW8 1703 aa26.21■■□□□ 1.79
CHD2-218ENST00000629346 BICRAQ9NZM4 1560 aa26.09■■□□□ 1.77
CHD2-218ENST00000629346 CECR2Q9BXF3 1484 aa25.84■■□□□ 1.73
CHD2-218ENST00000629346 MYO15BQ96JP2 1530 aa25.78■■□□□ 1.72
CHD2-218ENST00000629346 CC2D2AQ9P2K1 1620 aa25.77■■□□□ 1.72
CHD2-218ENST00000629346 DNAJC5Q9H3Z4 198 aa25.77■■□□□ 1.72
CHD2-218ENST00000629346 SHROOM4Q9ULL8 1493 aa25.55■■□□□ 1.68
CHD2-218ENST00000629346 EIF4G1Q04637 1599 aaKnown RBP25.52■■□□□ 1.68
CHD2-218ENST00000629346 SCRIBQ14160 1630 aa25.38■■□□□ 1.65
CHD2-218ENST00000629346 ZCCHC6Q5VYS8 1495 aaKnown RBP25.24■■□□□ 1.63
CHD2-218ENST00000629346 DCAF1Q9Y4B6 1507 aa25.21■■□□□ 1.63
CHD2-218ENST00000629346 CUX2O14529 1486 aa24.88■■□□□ 1.57
CHD2-218ENST00000629346 ERCC6Q03468 1493 aa24.77■■□□□ 1.56
CHD2-218ENST00000629346 NCAPD3P42695 1498 aa24.46■■□□□ 1.51
CHD2-218ENST00000629346 TRIM41Q8WV44 630 aa24.46■■□□□ 1.51
CHD2-218ENST00000629346 NESP48681 1621 aa24.39■■□□□ 1.5
CHD2-218ENST00000629346 ATAD2BQ9ULI0 1458 aa24.31■■□□□ 1.48
CHD2-218ENST00000629346 THOC2Q8NI27 1593 aaKnown RBP24.2■■□□□ 1.46
CHD2-218ENST00000629346 HMGXB3Q12766 1538 aa24.17■■□□□ 1.46
CHD2-218ENST00000629346 SMARCA2P51531 1590 aa24.16■■□□□ 1.46
CHD2-218ENST00000629346 SMARCA4P51532 1647 aa24.08■■□□□ 1.45
CHD2-218ENST00000629346 BAZ1BQ9UIG0 1483 aaKnown RBP24.05■■□□□ 1.44
CHD2-218ENST00000629346 LAMC3Q9Y6N6 1575 aa24■■□□□ 1.43
CHD2-218ENST00000629346 KIF21AQ7Z4S6 1674 aa23.99■■□□□ 1.43
CHD2-218ENST00000629346 PDS5BQ9NTI5 1447 aa23.94■■□□□ 1.42
CHD2-218ENST00000629346 BAZ1AQ9NRL2 1556 aaPredicted RBP23.84■■□□□ 1.41
CHD2-218ENST00000629346 PEG3Q9GZU2 1588 aa23.78■■□□□ 1.4
CHD2-218ENST00000629346 MRC2Q9UBG0 1479 aa23.77■■□□□ 1.4
CHD2-218ENST00000629346 OSCARQ8IYS5 282 aa23.72■■□□□ 1.39
CHD2-218ENST00000629346 CADPSQ9ULU8 1353 aa23.72■■□□□ 1.39
CHD2-218ENST00000629346 WDR62O43379 1518 aa23.69■■□□□ 1.38
CHD2-218ENST00000629346 MROH2BQ7Z745 1585 aa23.67■■□□□ 1.38
CHD2-218ENST00000629346 CEP164Q9UPV0 1460 aa23.54■■□□□ 1.36
CHD2-218ENST00000629346 FANCD2Q9BXW9 1451 aa23.46■■□□□ 1.35
CHD2-218ENST00000629346 RIMBP3CA6NJZ7 1639 aa23.44■■□□□ 1.34
CHD2-218ENST00000629346 RIMBP3BA6NNM3 1639 aa23.44■■□□□ 1.34
CHD2-218ENST00000629346 RIMBP3Q9UFD9 1639 aa23.44■■□□□ 1.34
CHD2-218ENST00000629346 WIZO95785 1651 aa23.36■■□□□ 1.33
CHD2-218ENST00000629346 URB2Q14146 1524 aaKnown RBP23.31■■□□□ 1.32
CHD2-218ENST00000629346 ARHGEF11O15085 1522 aa23.29■■□□□ 1.32
CHD2-218ENST00000629346 TRHP20396 242 aaPredicted RBP23.29■■□□□ 1.32
CHD2-218ENST00000629346 CYB5RLQ6IPT4 315 aa23.28■■□□□ 1.32
CHD2-218ENST00000629346 CFTRP13569 1480 aa23.27■■□□□ 1.32
CHD2-218ENST00000629346 ZNF608Q9ULD9 1512 aaPredicted RBP23.17■■□□□ 1.3
CHD2-218ENST00000629346 AEBP2Q6ZN18 517 aaPredicted RBP23.13■■□□□ 1.29
CHD2-218ENST00000629346 IFT140Q96RY7 1462 aa23.07■■□□□ 1.28
CHD2-218ENST00000629346 ARAP1Q96P48 1450 aa23.02■■□□□ 1.28
CHD2-218ENST00000629346 FBLN2P98095 1184 aa22.98■■□□□ 1.27
CHD2-218ENST00000629346 TOP2AP11388 1531 aaKnown RBP22.95■■□□□ 1.26
CHD2-218ENST00000629346 EIF4G3O43432 1585 aaKnown RBP22.94■■□□□ 1.26
CHD2-218ENST00000629346 TOPBP1Q92547 1522 aa22.92■■□□□ 1.26
CHD2-218ENST00000629346 CHD1O14646 1710 aa22.91■■□□□ 1.26
CHD2-218ENST00000629346 RSF1Q96T23 1441 aaPredicted RBP22.91■■□□□ 1.26
CHD2-218ENST00000629346 AQRO60306 1485 aaKnown RBP eCLIP22.9■■□□□ 1.263e-8■□□□□ 8.2
CHD2-218ENST00000629346 PRDM2Q13029 1718 aa22.89■■□□□ 1.26
CHD2-218ENST00000629346 ABCC8Q09428 1581 aa22.77■■□□□ 1.24
CHD2-218ENST00000629346 CCDC88BA6NC98 1476 aa22.77■■□□□ 1.24
CHD2-218ENST00000629346 DNMBPQ6XZF7 1577 aa22.75■■□□□ 1.23
CHD2-218ENST00000629346 TARBP1Q13395 1621 aaKnown RBP22.75■■□□□ 1.23
CHD2-218ENST00000629346 TDRD9Q8NDG6 1382 aaKnown RBP22.65■■□□□ 1.22
CHD2-218ENST00000629346 POLA1P09884 1462 aaPredicted RBP22.64■■□□□ 1.21
CHD2-218ENST00000629346 RAD54L2Q9Y4B4 1467 aa22.63■■□□□ 1.21
CHD2-218ENST00000629346 CHMP7Q8WUX9 453 aaPredicted RBP22.63■■□□□ 1.21
CHD2-218ENST00000629346 CLASP1Q7Z460 1538 aa22.62■■□□□ 1.21
CHD2-218ENST00000629346 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
CHD2-218ENST00000629346 SOGA1O94964 1423 aa22.57■■□□□ 1.2
CHD2-218ENST00000629346 SYNJ1O43426 1573 aa22.55■■□□□ 1.2
CHD2-218ENST00000629346 GAPVD1Q14C86 1478 aa22.49■■□□□ 1.19
CHD2-218ENST00000629346 MAGI1Q96QZ7 1491 aaPredicted RBP22.45■■□□□ 1.18
CHD2-218ENST00000629346 SYNJ2O15056 1496 aa22.41■■□□□ 1.18
CHD2-218ENST00000629346 GRIN2BQ13224 1484 aa22.41■■□□□ 1.18
CHD2-218ENST00000629346 FGD5Q6ZNL6 1462 aa22.41■■□□□ 1.18
CHD2-218ENST00000629346 WDR97A6NE52 1622 aa22.37■■□□□ 1.17
CHD2-218ENST00000629346 ERCC6L2Q5T890 1561 aa22.29■■□□□ 1.16
CHD2-218ENST00000629346 CUX1P39880 1505 aa22.27■■□□□ 1.16
CHD2-218ENST00000629346 PBRM1Q86U86 1689 aa22.24■■□□□ 1.15
CHD2-218ENST00000629346 ILDR1Q86SU0 546 aaPredicted RBP22.19■■□□□ 1.14
CHD2-218ENST00000629346 CEP170Q5SW79 1584 aa22.15■■□□□ 1.14
CHD2-218ENST00000629346 KIF13AQ9H1H9 1805 aa22.14■■□□□ 1.13
CHD2-218ENST00000629346 GRIN2AQ12879 1464 aa22.12■■□□□ 1.13
CHD2-218ENST00000629346 ABCA5Q8WWZ7 1642 aa22.09■■□□□ 1.13
CHD2-218ENST00000629346 FAM69CQ0P6D2 419 aa22.08■■□□□ 1.13
CHD2-218ENST00000629346 ABCA10Q8WWZ4 1543 aa22.07■■□□□ 1.12
CHD2-218ENST00000629346 KDM4FA0A1W2PPD8 638 aa22.07■■□□□ 1.12
CHD2-218ENST00000629346 NUP160Q12769 1436 aa22.05■■□□□ 1.12
CHD2-218ENST00000629346 SHROOM2Q13796 1616 aa22.01■■□□□ 1.11
CHD2-218ENST00000629346 ADAMTS12P58397 1594 aa21.99■■□□□ 1.11
CHD2-218ENST00000629346 PRG4Q92954 1404 aaPredicted RBP21.97■■□□□ 1.11
CHD2-218ENST00000629346 NPM1P06748 294 aaKnown RBP eCLIP21.97■■□□□ 1.11
CHD2-218ENST00000629346 ABCC10Q5T3U5 1492 aa21.96■■□□□ 1.11
CHD2-218ENST00000629346 FHAD1B1AJZ9 1412 aa21.92■■□□□ 1.1
CHD2-218ENST00000629346 JPH4Q96JJ6 628 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms