RNA–Protein interactions for RNA: ENST00000628118.1

CHD2-213, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 1 (best)

Gene CHD2, Length 585 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-213ENST00000628118 NISCHQ9Y2I1 1504 aa19.3■□□□□ 0.68
CHD2-213ENST00000628118 AEBP2Q6ZN18 517 aaPredicted RBP18.97■□□□□ 0.63
CHD2-213ENST00000628118 CHIC1Q5VXU3 224 aa18.47■□□□□ 0.55
CHD2-213ENST00000628118 CCDC180Q9P1Z9 1646 aa17.14■□□□□ 0.33
CHD2-213ENST00000628118 ABCC9O60706 1549 aa16.58■□□□□ 0.24
CHD2-213ENST00000628118 PHF23Q9BUL5 403 aaPredicted RBP16.26■□□□□ 0.19
CHD2-213ENST00000628118 SENP3Q9H4L4 574 aaPredicted RBP16.11■□□□□ 0.17
CHD2-213ENST00000628118 NACADO15069 1562 aa16.11■□□□□ 0.17
CHD2-213ENST00000628118 ZCCHC6Q5VYS8 1495 aaKnown RBP16.1■□□□□ 0.17
CHD2-213ENST00000628118 MYO15BQ96JP2 1530 aa16.09■□□□□ 0.17
CHD2-213ENST00000628118 RB1CC1Q8TDY2 1594 aa16.09■□□□□ 0.17
CHD2-213ENST00000628118 DCAF1Q9Y4B6 1507 aa16.04■□□□□ 0.16
CHD2-213ENST00000628118 DCAF8L2P0C7V8 631 aa16.01■□□□□ 0.15
CHD2-213ENST00000628118 UNC13AQ9UPW8 1703 aa15.65■□□□□ 0.1
CHD2-213ENST00000628118 SCRIBQ14160 1630 aa15.56■□□□□ 0.08
CHD2-213ENST00000628118 BICRAQ9NZM4 1560 aa15.53■□□□□ 0.08
CHD2-213ENST00000628118 SHROOM4Q9ULL8 1493 aa15.52■□□□□ 0.08
CHD2-213ENST00000628118 PABPN1Q86U42 306 aaKnown RBP eCLIP15.5■□□□□ 0.07
CHD2-213ENST00000628118 EIF4G1Q04637 1599 aaKnown RBP15.14■□□□□ 0.01
CHD2-213ENST00000628118 DNAJC5BQ9UF47 199 aa15.09■□□□□ 0.01
CHD2-213ENST00000628118 CC2D2AQ9P2K1 1620 aa15.03■□□□□ -0
CHD2-213ENST00000628118 BAZ1AQ9NRL2 1556 aaPredicted RBP14.98□□□□□ -0.01
CHD2-213ENST00000628118 PLPPR3Q6T4P5 718 aa14.97□□□□□ -0.01
CHD2-213ENST00000628118 CECR2Q9BXF3 1484 aa14.96□□□□□ -0.01
CHD2-213ENST00000628118 FOXD1Q16676 465 aa14.96□□□□□ -0.01
CHD2-213ENST00000628118 SMARCA4P51532 1647 aa14.94□□□□□ -0.02
CHD2-213ENST00000628118 SMARCA2P51531 1590 aa14.87□□□□□ -0.03
CHD2-213ENST00000628118 NCAPD3P42695 1498 aa14.85□□□□□ -0.03
CHD2-213ENST00000628118 ATAD2BQ9ULI0 1458 aa14.85□□□□□ -0.03
CHD2-213ENST00000628118 PEG3Q9GZU2 1588 aa14.84□□□□□ -0.03
CHD2-213ENST00000628118 MROH2BQ7Z745 1585 aa14.83□□□□□ -0.04
CHD2-213ENST00000628118 HMGXB3Q12766 1538 aa14.79□□□□□ -0.04
CHD2-213ENST00000628118 BAZ1BQ9UIG0 1483 aaKnown RBP14.73□□□□□ -0.05
CHD2-213ENST00000628118 RSF1Q96T23 1441 aaPredicted RBP14.72□□□□□ -0.05
CHD2-213ENST00000628118 WIZO95785 1651 aa14.66□□□□□ -0.06
CHD2-213ENST00000628118 TOP2AP11388 1531 aaKnown RBP14.57□□□□□ -0.08
CHD2-213ENST00000628118 LAMC3Q9Y6N6 1575 aa14.44□□□□□ -0.1
CHD2-213ENST00000628118 CADPSQ9ULU8 1353 aa14.42□□□□□ -0.1
CHD2-213ENST00000628118 SUPT5HO00267 1087 aaKnown RBP14.37□□□□□ -0.11
CHD2-213ENST00000628118 PPP6R1Q9UPN7 881 aa14.37□□□□□ -0.11
CHD2-213ENST00000628118 CCDC88BA6NC98 1476 aa14.37□□□□□ -0.11
CHD2-213ENST00000628118 PDS5BQ9NTI5 1447 aa14.36□□□□□ -0.11
CHD2-213ENST00000628118 NESP48681 1621 aa14.36□□□□□ -0.11
CHD2-213ENST00000628118 CFTRP13569 1480 aa14.35□□□□□ -0.11
CHD2-213ENST00000628118 ERCC6Q03468 1493 aa14.33□□□□□ -0.12
CHD2-213ENST00000628118 ADRA2BP18089 450 aa14.32□□□□□ -0.12
CHD2-213ENST00000628118 POTEDQ86YR6 584 aa14.29□□□□□ -0.12
CHD2-213ENST00000628118 PRDM2Q13029 1718 aa14.25□□□□□ -0.13
CHD2-213ENST00000628118 FANCD2Q9BXW9 1451 aa14.22□□□□□ -0.13
CHD2-213ENST00000628118 KIF21AQ7Z4S6 1674 aa14.21□□□□□ -0.13
CHD2-213ENST00000628118 CEP164Q9UPV0 1460 aa14.21□□□□□ -0.13
CHD2-213ENST00000628118 CUX2O14529 1486 aa14.2□□□□□ -0.14
CHD2-213ENST00000628118 MRC2Q9UBG0 1479 aa14.17□□□□□ -0.14
CHD2-213ENST00000628118 THOC2Q8NI27 1593 aaKnown RBP14.17□□□□□ -0.14
CHD2-213ENST00000628118 WDR62O43379 1518 aa14.12□□□□□ -0.15
CHD2-213ENST00000628118 ABCC8Q09428 1581 aa14.1□□□□□ -0.15
CHD2-213ENST00000628118 PIAS4Q8N2W9 510 aaPredicted RBP14.06□□□□□ -0.16
CHD2-213ENST00000628118 URB2Q14146 1524 aaKnown RBP14.05□□□□□ -0.16
CHD2-213ENST00000628118 DNMBPQ6XZF7 1577 aa14.01□□□□□ -0.17
CHD2-213ENST00000628118 TOPBP1Q92547 1522 aa14□□□□□ -0.17
CHD2-213ENST00000628118 IFT140Q96RY7 1462 aa13.93□□□□□ -0.18
CHD2-213ENST00000628118 CUX1P39880 1505 aa13.91□□□□□ -0.18
CHD2-213ENST00000628118 WRNQ14191 1432 aaPredicted RBP eCLIP13.9□□□□□ -0.18
CHD2-213ENST00000628118 POLA1P09884 1462 aaPredicted RBP13.89□□□□□ -0.19
CHD2-213ENST00000628118 FGD5Q6ZNL6 1462 aa13.87□□□□□ -0.19
CHD2-213ENST00000628118 TOP2BQ02880 1626 aa13.86□□□□□ -0.19
CHD2-213ENST00000628118 SOGA1O94964 1423 aa13.85□□□□□ -0.19
CHD2-213ENST00000628118 BIVM-ERCC5R4GMW8 1640 aa13.85□□□□□ -0.19
CHD2-213ENST00000628118 WDR97A6NE52 1622 aa13.83□□□□□ -0.2
CHD2-213ENST00000628118 TARBP1Q13395 1621 aaKnown RBP13.83□□□□□ -0.2
CHD2-213ENST00000628118 MSH5O43196 834 aa13.82□□□□□ -0.2
CHD2-213ENST00000628118 SYNJ1O43426 1573 aa13.8□□□□□ -0.2
CHD2-213ENST00000628118 RAD54L2Q9Y4B4 1467 aa13.79□□□□□ -0.2
CHD2-213ENST00000628118 ABCA10Q8WWZ4 1543 aa13.78□□□□□ -0.2
CHD2-213ENST00000628118 ZNF608Q9ULD9 1512 aaPredicted RBP13.77□□□□□ -0.21
CHD2-213ENST00000628118 EIF4G3O43432 1585 aaKnown RBP13.75□□□□□ -0.21
CHD2-213ENST00000628118 AQRO60306 1485 aaKnown RBP eCLIP13.73□□□□□ -0.211e-9■■□□□ 14
CHD2-213ENST00000628118 TDRD9Q8NDG6 1382 aaKnown RBP13.71□□□□□ -0.21
CHD2-213ENST00000628118 GRIN2BQ13224 1484 aa13.69□□□□□ -0.22
CHD2-213ENST00000628118 GAPVD1Q14C86 1478 aa13.69□□□□□ -0.22
CHD2-213ENST00000628118 ABCA5Q8WWZ7 1642 aa13.68□□□□□ -0.22
CHD2-213ENST00000628118 MAGI1Q96QZ7 1491 aaPredicted RBP13.66□□□□□ -0.22
CHD2-213ENST00000628118 TRIM41Q8WV44 630 aa13.63□□□□□ -0.23
CHD2-213ENST00000628118 KIF27Q86VH2 1401 aa13.63□□□□□ -0.23
CHD2-213ENST00000628118 PBRM1Q86U86 1689 aa13.63□□□□□ -0.23
CHD2-213ENST00000628118 SNAPC4Q5SXM2 1469 aa13.62□□□□□ -0.23
CHD2-213ENST00000628118 ERICH3Q5RHP9 1530 aa13.62□□□□□ -0.23
CHD2-213ENST00000628118 OSCARQ8IYS5 282 aa13.61□□□□□ -0.23
CHD2-213ENST00000628118 DNAJC5Q9H3Z4 198 aa13.6□□□□□ -0.23
CHD2-213ENST00000628118 SYNJ2O15056 1496 aa13.59□□□□□ -0.23
CHD2-213ENST00000628118 CHMP7Q8WUX9 453 aaPredicted RBP13.57□□□□□ -0.24
CHD2-213ENST00000628118 FHAD1B1AJZ9 1412 aa13.56□□□□□ -0.24
CHD2-213ENST00000628118 ADAMTS12P58397 1594 aa13.54□□□□□ -0.24
CHD2-213ENST00000628118 CHD1O14646 1710 aa13.54□□□□□ -0.24
CHD2-213ENST00000628118 FBLN2P98095 1184 aa13.54□□□□□ -0.24
CHD2-213ENST00000628118 IGF1RP08069 1367 aa13.53□□□□□ -0.24
CHD2-213ENST00000628118 CUL7Q14999 1698 aa13.51□□□□□ -0.25
CHD2-213ENST00000628118 GRIN2AQ12879 1464 aa13.49□□□□□ -0.25
CHD2-213ENST00000628118 EEA1Q15075 1411 aa13.47□□□□□ -0.25
CHD2-213ENST00000628118 CARMIL1Q5VZK9 1371 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms