RNA–Protein interactions for RNA: ENST00000627622.1

CHD2-212, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 2 BASIC

Gene CHD2, Length 1,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-212ENST00000627622 NISCHQ9Y2I1 1504 aa22.01■■□□□ 1.11
CHD2-212ENST00000627622 ABCC9O60706 1549 aa19.96■□□□□ 0.79
CHD2-212ENST00000627622 CCDC180Q9P1Z9 1646 aa19.85■□□□□ 0.77
CHD2-212ENST00000627622 AEBP2Q6ZN18 517 aaPredicted RBP19.39■□□□□ 0.7
CHD2-212ENST00000627622 RB1CC1Q8TDY2 1594 aa18.96■□□□□ 0.63
CHD2-212ENST00000627622 DNAJC5BQ9UF47 199 aa18.88■□□□□ 0.61
CHD2-212ENST00000627622 NACADO15069 1562 aa18.79■□□□□ 0.6
CHD2-212ENST00000627622 DCAF8L2P0C7V8 631 aa18.64■□□□□ 0.57
CHD2-212ENST00000627622 UNC13AQ9UPW8 1703 aa18.59■□□□□ 0.57
CHD2-212ENST00000627622 PABPN1Q86U42 306 aaKnown RBP eCLIP18.55■□□□□ 0.56
CHD2-212ENST00000627622 MYO15BQ96JP2 1530 aa18.48■□□□□ 0.55
CHD2-212ENST00000627622 BICRAQ9NZM4 1560 aa18.41■□□□□ 0.54
CHD2-212ENST00000627622 CHIC1Q5VXU3 224 aa18.29■□□□□ 0.52
CHD2-212ENST00000627622 ZCCHC6Q5VYS8 1495 aaKnown RBP18.19■□□□□ 0.5
CHD2-212ENST00000627622 DCAF1Q9Y4B6 1507 aa18.17■□□□□ 0.5
CHD2-212ENST00000627622 SHROOM4Q9ULL8 1493 aa18.14■□□□□ 0.49
CHD2-212ENST00000627622 CC2D2AQ9P2K1 1620 aa18.05■□□□□ 0.48
CHD2-212ENST00000627622 SCRIBQ14160 1630 aa18.05■□□□□ 0.48
CHD2-212ENST00000627622 CECR2Q9BXF3 1484 aa18■□□□□ 0.47
CHD2-212ENST00000627622 EIF4G1Q04637 1599 aaKnown RBP17.97■□□□□ 0.47
CHD2-212ENST00000627622 POTEDQ86YR6 584 aa17.71■□□□□ 0.43
CHD2-212ENST00000627622 DNAJC5Q9H3Z4 198 aa17.47■□□□□ 0.39
CHD2-212ENST00000627622 NCAPD3P42695 1498 aa17.33■□□□□ 0.37
CHD2-212ENST00000627622 CUX2O14529 1486 aa17.29■□□□□ 0.36
CHD2-212ENST00000627622 ERCC6Q03468 1493 aa17.26■□□□□ 0.35
CHD2-212ENST00000627622 ATAD2BQ9ULI0 1458 aa17.25■□□□□ 0.35
CHD2-212ENST00000627622 SMARCA2P51531 1590 aa17.21■□□□□ 0.35
CHD2-212ENST00000627622 SMARCA4P51532 1647 aa17.21■□□□□ 0.35
CHD2-212ENST00000627622 HMGXB3Q12766 1538 aa17.2■□□□□ 0.34
CHD2-212ENST00000627622 NESP48681 1621 aa17.11■□□□□ 0.33
CHD2-212ENST00000627622 BAZ1AQ9NRL2 1556 aaPredicted RBP17.09■□□□□ 0.33
CHD2-212ENST00000627622 BAZ1BQ9UIG0 1483 aaKnown RBP17.08■□□□□ 0.32
CHD2-212ENST00000627622 PEG3Q9GZU2 1588 aa17.05■□□□□ 0.32
CHD2-212ENST00000627622 THOC2Q8NI27 1593 aaKnown RBP16.99■□□□□ 0.31
CHD2-212ENST00000627622 LAMC3Q9Y6N6 1575 aa16.99■□□□□ 0.31
CHD2-212ENST00000627622 SENP3Q9H4L4 574 aaPredicted RBP16.97■□□□□ 0.31
CHD2-212ENST00000627622 MROH2BQ7Z745 1585 aa16.95■□□□□ 0.3
CHD2-212ENST00000627622 KIF21AQ7Z4S6 1674 aa16.93■□□□□ 0.3
CHD2-212ENST00000627622 PDS5BQ9NTI5 1447 aa16.88■□□□□ 0.29
CHD2-212ENST00000627622 CADPSQ9ULU8 1353 aa16.79■□□□□ 0.28
CHD2-212ENST00000627622 WIZO95785 1651 aa16.77■□□□□ 0.27
CHD2-212ENST00000627622 MRC2Q9UBG0 1479 aa16.73■□□□□ 0.27
CHD2-212ENST00000627622 WDR62O43379 1518 aa16.71■□□□□ 0.27
CHD2-212ENST00000627622 CEP164Q9UPV0 1460 aa16.64■□□□□ 0.25
CHD2-212ENST00000627622 TRIM41Q8WV44 630 aa16.62■□□□□ 0.25
CHD2-212ENST00000627622 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
CHD2-212ENST00000627622 CFTRP13569 1480 aa16.57■□□□□ 0.24
CHD2-212ENST00000627622 RSF1Q96T23 1441 aaPredicted RBP16.53■□□□□ 0.24
CHD2-212ENST00000627622 TOP2AP11388 1531 aaKnown RBP16.52■□□□□ 0.23
CHD2-212ENST00000627622 OSCARQ8IYS5 282 aa16.48■□□□□ 0.23
CHD2-212ENST00000627622 URB2Q14146 1524 aaKnown RBP16.47■□□□□ 0.23
CHD2-212ENST00000627622 PRDM2Q13029 1718 aa16.47■□□□□ 0.23
CHD2-212ENST00000627622 PHF23Q9BUL5 403 aaPredicted RBP16.44■□□□□ 0.22
CHD2-212ENST00000627622 CCDC88BA6NC98 1476 aa16.34■□□□□ 0.21
CHD2-212ENST00000627622 IFT140Q96RY7 1462 aa16.31■□□□□ 0.2
CHD2-212ENST00000627622 ZNF608Q9ULD9 1512 aaPredicted RBP16.3■□□□□ 0.2
CHD2-212ENST00000627622 RIMBP3CA6NJZ7 1639 aa16.29■□□□□ 0.2
CHD2-212ENST00000627622 RIMBP3BA6NNM3 1639 aa16.29■□□□□ 0.2
CHD2-212ENST00000627622 RIMBP3Q9UFD9 1639 aa16.29■□□□□ 0.2
CHD2-212ENST00000627622 TOPBP1Q92547 1522 aa16.28■□□□□ 0.2
CHD2-212ENST00000627622 ABCC8Q09428 1581 aa16.25■□□□□ 0.19
CHD2-212ENST00000627622 EIF4G3O43432 1585 aaKnown RBP16.22■□□□□ 0.19
CHD2-212ENST00000627622 DNMBPQ6XZF7 1577 aa16.21■□□□□ 0.19
CHD2-212ENST00000627622 ARHGEF11O15085 1522 aa16.2■□□□□ 0.18
CHD2-212ENST00000627622 TARBP1Q13395 1621 aaKnown RBP16.16■□□□□ 0.18
CHD2-212ENST00000627622 CHD1O14646 1710 aa16.16■□□□□ 0.18
CHD2-212ENST00000627622 AQRO60306 1485 aaKnown RBP eCLIP16.13■□□□□ 0.173e-8■□□□□ 8.2
CHD2-212ENST00000627622 POLA1P09884 1462 aaPredicted RBP16.09■□□□□ 0.17
CHD2-212ENST00000627622 CYB5RLQ6IPT4 315 aa16.09■□□□□ 0.17
CHD2-212ENST00000627622 FBLN2P98095 1184 aa16.06■□□□□ 0.16
CHD2-212ENST00000627622 RAD54L2Q9Y4B4 1467 aa16.04■□□□□ 0.16
CHD2-212ENST00000627622 SOGA1O94964 1423 aa16.02■□□□□ 0.16
CHD2-212ENST00000627622 ARAP1Q96P48 1450 aa16.02■□□□□ 0.16
CHD2-212ENST00000627622 TDRD9Q8NDG6 1382 aaKnown RBP16■□□□□ 0.15
CHD2-212ENST00000627622 WDR97A6NE52 1622 aa15.99■□□□□ 0.15
CHD2-212ENST00000627622 TRHP20396 242 aaPredicted RBP15.97■□□□□ 0.15
CHD2-212ENST00000627622 FGD5Q6ZNL6 1462 aa15.97■□□□□ 0.15
CHD2-212ENST00000627622 SNAPC4Q5SXM2 1469 aa15.96■□□□□ 0.15
CHD2-212ENST00000627622 CUX1P39880 1505 aa15.93■□□□□ 0.14
CHD2-212ENST00000627622 CLASP1Q7Z460 1538 aa15.93■□□□□ 0.14
CHD2-212ENST00000627622 SYNJ1O43426 1573 aa15.92■□□□□ 0.14
CHD2-212ENST00000627622 MAGI1Q96QZ7 1491 aaPredicted RBP15.92■□□□□ 0.14
CHD2-212ENST00000627622 CHMP7Q8WUX9 453 aaPredicted RBP15.92■□□□□ 0.14
CHD2-212ENST00000627622 GRIN2BQ13224 1484 aa15.9■□□□□ 0.14
CHD2-212ENST00000627622 FOXD1Q16676 465 aa15.88■□□□□ 0.13
CHD2-212ENST00000627622 PBRM1Q86U86 1689 aa15.87■□□□□ 0.13
CHD2-212ENST00000627622 SYNJ2O15056 1496 aa15.87■□□□□ 0.13
CHD2-212ENST00000627622 GAPVD1Q14C86 1478 aa15.83■□□□□ 0.12
CHD2-212ENST00000627622 ABCA5Q8WWZ7 1642 aa15.79■□□□□ 0.12
CHD2-212ENST00000627622 ABCA10Q8WWZ4 1543 aa15.78■□□□□ 0.12
CHD2-212ENST00000627622 GRIN2AQ12879 1464 aa15.7■□□□□ 0.1
CHD2-212ENST00000627622 WRNQ14191 1432 aaPredicted RBP eCLIP15.69■□□□□ 0.1
CHD2-212ENST00000627622 ADAMTS12P58397 1594 aa15.67■□□□□ 0.1
CHD2-212ENST00000627622 ERCC6L2Q5T890 1561 aa15.67■□□□□ 0.1
CHD2-212ENST00000627622 SUPT5HO00267 1087 aaKnown RBP15.67■□□□□ 0.1
CHD2-212ENST00000627622 BIVM-ERCC5R4GMW8 1640 aa15.66■□□□□ 0.1
CHD2-212ENST00000627622 CEP170Q5SW79 1584 aa15.65■□□□□ 0.1
CHD2-212ENST00000627622 TOP2BQ02880 1626 aa15.65■□□□□ 0.1
CHD2-212ENST00000627622 NUP160Q12769 1436 aa15.65■□□□□ 0.1
CHD2-212ENST00000627622 SHROOM2Q13796 1616 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms