RNA–Protein interactions for RNA: ENST00000625905.1

NELFE-214, Transcript of negative elongation factor complex member E, humanhuman

TSL 5 BASIC

Gene NELFE, Length 111 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-214ENST00000625905 NISCHQ9Y2I1 1504 aa22.38■■□□□ 1.17
NELFE-214ENST00000625905 CCDC180Q9P1Z9 1646 aa19.94■□□□□ 0.78
NELFE-214ENST00000625905 ABCC9O60706 1549 aa19.42■□□□□ 0.7
NELFE-214ENST00000625905 RB1CC1Q8TDY2 1594 aa18.73■□□□□ 0.59
NELFE-214ENST00000625905 NACADO15069 1562 aa18.71■□□□□ 0.59
NELFE-214ENST00000625905 ZCCHC6Q5VYS8 1495 aaKnown RBP18.68■□□□□ 0.58
NELFE-214ENST00000625905 DCAF8L2P0C7V8 631 aa18.61■□□□□ 0.57
NELFE-214ENST00000625905 MYO15BQ96JP2 1530 aa18.59■□□□□ 0.57
NELFE-214ENST00000625905 DCAF1Q9Y4B6 1507 aa18.53■□□□□ 0.56
NELFE-214ENST00000625905 UNC13AQ9UPW8 1703 aa18.3■□□□□ 0.52
NELFE-214ENST00000625905 SCRIBQ14160 1630 aa18.2■□□□□ 0.5
NELFE-214ENST00000625905 BICRAQ9NZM4 1560 aa18.13■□□□□ 0.49
NELFE-214ENST00000625905 PABPN1Q86U42 306 aaKnown RBP eCLIP18.1■□□□□ 0.49
NELFE-214ENST00000625905 SHROOM4Q9ULL8 1493 aa18■□□□□ 0.47
NELFE-214ENST00000625905 DNAJC5BQ9UF47 199 aa17.68■□□□□ 0.42
NELFE-214ENST00000625905 EIF4G1Q04637 1599 aaKnown RBP17.67■□□□□ 0.42
NELFE-214ENST00000625905 CC2D2AQ9P2K1 1620 aa17.58■□□□□ 0.41
NELFE-214ENST00000625905 CECR2Q9BXF3 1484 aa17.45■□□□□ 0.38
NELFE-214ENST00000625905 SMARCA4P51532 1647 aa17.39■□□□□ 0.37
NELFE-214ENST00000625905 BAZ1AQ9NRL2 1556 aaPredicted RBP17.37■□□□□ 0.37
NELFE-214ENST00000625905 SMARCA2P51531 1590 aa17.27■□□□□ 0.35
NELFE-214ENST00000625905 ATAD2BQ9ULI0 1458 aa17.24■□□□□ 0.35
NELFE-214ENST00000625905 MROH2BQ7Z745 1585 aa17.24■□□□□ 0.35
NELFE-214ENST00000625905 NCAPD3P42695 1498 aa17.22■□□□□ 0.35
NELFE-214ENST00000625905 PEG3Q9GZU2 1588 aa17.2■□□□□ 0.34
NELFE-214ENST00000625905 HMGXB3Q12766 1538 aa17.2■□□□□ 0.34
NELFE-214ENST00000625905 BAZ1BQ9UIG0 1483 aaKnown RBP17.14■□□□□ 0.33
NELFE-214ENST00000625905 WIZO95785 1651 aa17.07■□□□□ 0.32
NELFE-214ENST00000625905 RSF1Q96T23 1441 aaPredicted RBP17.04■□□□□ 0.32
NELFE-214ENST00000625905 TOP2AP11388 1531 aaKnown RBP16.93■□□□□ 0.3
NELFE-214ENST00000625905 NESP48681 1621 aa16.81■□□□□ 0.28
NELFE-214ENST00000625905 LAMC3Q9Y6N6 1575 aa16.81■□□□□ 0.28
NELFE-214ENST00000625905 ERCC6Q03468 1493 aa16.77■□□□□ 0.28
NELFE-214ENST00000625905 CADPSQ9ULU8 1353 aa16.71■□□□□ 0.27
NELFE-214ENST00000625905 CCDC88BA6NC98 1476 aa16.67■□□□□ 0.26
NELFE-214ENST00000625905 PDS5BQ9NTI5 1447 aa16.66■□□□□ 0.26
NELFE-214ENST00000625905 KIF21AQ7Z4S6 1674 aa16.65■□□□□ 0.26
NELFE-214ENST00000625905 CFTRP13569 1480 aa16.64■□□□□ 0.25
NELFE-214ENST00000625905 SUPT5HO00267 1087 aaKnown RBP16.61■□□□□ 0.25
NELFE-214ENST00000625905 THOC2Q8NI27 1593 aaKnown RBP16.6■□□□□ 0.25
NELFE-214ENST00000625905 PRDM2Q13029 1718 aa16.59■□□□□ 0.25
NELFE-214ENST00000625905 CUX2O14529 1486 aa16.57■□□□□ 0.24
NELFE-214ENST00000625905 FANCD2Q9BXW9 1451 aa16.56■□□□□ 0.24
NELFE-214ENST00000625905 CEP164Q9UPV0 1460 aa16.56■□□□□ 0.24
NELFE-214ENST00000625905 MRC2Q9UBG0 1479 aa16.52■□□□□ 0.23
NELFE-214ENST00000625905 WDR62O43379 1518 aa16.47■□□□□ 0.23
NELFE-214ENST00000625905 URB2Q14146 1524 aaKnown RBP16.38■□□□□ 0.21
NELFE-214ENST00000625905 DNMBPQ6XZF7 1577 aa16.3■□□□□ 0.2
NELFE-214ENST00000625905 ABCC8Q09428 1581 aa16.3■□□□□ 0.2
NELFE-214ENST00000625905 TOPBP1Q92547 1522 aa16.29■□□□□ 0.2
NELFE-214ENST00000625905 IFT140Q96RY7 1462 aa16.2■□□□□ 0.18
NELFE-214ENST00000625905 CUX1P39880 1505 aa16.19■□□□□ 0.18
NELFE-214ENST00000625905 POLA1P09884 1462 aaPredicted RBP16.16■□□□□ 0.18
NELFE-214ENST00000625905 FGD5Q6ZNL6 1462 aa16.14■□□□□ 0.17
NELFE-214ENST00000625905 TARBP1Q13395 1621 aaKnown RBP16.12■□□□□ 0.17
NELFE-214ENST00000625905 WRNQ14191 1432 aaPredicted RBP eCLIP16.1■□□□□ 0.17
NELFE-214ENST00000625905 ZNF608Q9ULD9 1512 aaPredicted RBP16.09■□□□□ 0.17
NELFE-214ENST00000625905 EIF4G3O43432 1585 aaKnown RBP16.09■□□□□ 0.17
NELFE-214ENST00000625905 BIVM-ERCC5R4GMW8 1640 aa16.08■□□□□ 0.17
NELFE-214ENST00000625905 SYNJ1O43426 1573 aa16.08■□□□□ 0.16
NELFE-214ENST00000625905 TOP2BQ02880 1626 aa16.08■□□□□ 0.16
NELFE-214ENST00000625905 RAD54L2Q9Y4B4 1467 aa16.07■□□□□ 0.16
NELFE-214ENST00000625905 SOGA1O94964 1423 aa16.06■□□□□ 0.16
NELFE-214ENST00000625905 WDR97A6NE52 1622 aa16.04■□□□□ 0.16
NELFE-214ENST00000625905 AQRO60306 1485 aaKnown RBP eCLIP15.99■□□□□ 0.151e-10■□□□□ 10.2
NELFE-214ENST00000625905 ABCA10Q8WWZ4 1543 aa15.98■□□□□ 0.15
NELFE-214ENST00000625905 TDRD9Q8NDG6 1382 aaKnown RBP15.96■□□□□ 0.15
NELFE-214ENST00000625905 ABCA5Q8WWZ7 1642 aa15.94■□□□□ 0.14
NELFE-214ENST00000625905 PBRM1Q86U86 1689 aa15.92■□□□□ 0.14
NELFE-214ENST00000625905 DNAJC5Q9H3Z4 198 aa15.92■□□□□ 0.14
NELFE-214ENST00000625905 GRIN2BQ13224 1484 aa15.91■□□□□ 0.14
NELFE-214ENST00000625905 GAPVD1Q14C86 1478 aa15.91■□□□□ 0.14
NELFE-214ENST00000625905 SNAPC4Q5SXM2 1469 aa15.9■□□□□ 0.14
NELFE-214ENST00000625905 MAGI1Q96QZ7 1491 aaPredicted RBP15.88■□□□□ 0.13
NELFE-214ENST00000625905 CHD1O14646 1710 aa15.88■□□□□ 0.13
NELFE-214ENST00000625905 ADAMTS12P58397 1594 aa15.8■□□□□ 0.12
NELFE-214ENST00000625905 SYNJ2O15056 1496 aa15.8■□□□□ 0.12
NELFE-214ENST00000625905 OSCARQ8IYS5 282 aa15.8■□□□□ 0.12
NELFE-214ENST00000625905 ERICH3Q5RHP9 1530 aa15.79■□□□□ 0.12
NELFE-214ENST00000625905 FBLN2P98095 1184 aa15.78■□□□□ 0.12
NELFE-214ENST00000625905 KIF27Q86VH2 1401 aa15.76■□□□□ 0.11
NELFE-214ENST00000625905 CHMP7Q8WUX9 453 aaPredicted RBP15.74■□□□□ 0.11
NELFE-214ENST00000625905 FHAD1B1AJZ9 1412 aa15.72■□□□□ 0.11
NELFE-214ENST00000625905 GRIN2AQ12879 1464 aa15.71■□□□□ 0.11
NELFE-214ENST00000625905 AEBP2Q6ZN18 517 aaPredicted RBP15.71■□□□□ 0.11
NELFE-214ENST00000625905 TRIM41Q8WV44 630 aa15.69■□□□□ 0.1
NELFE-214ENST00000625905 CUL7Q14999 1698 aa15.69■□□□□ 0.1
NELFE-214ENST00000625905 CLASP1Q7Z460 1538 aa15.68■□□□□ 0.1
NELFE-214ENST00000625905 CEP170Q5SW79 1584 aa15.64■□□□□ 0.09
NELFE-214ENST00000625905 RIMBP3CA6NJZ7 1639 aa15.63■□□□□ 0.09
NELFE-214ENST00000625905 RIMBP3BA6NNM3 1639 aa15.63■□□□□ 0.09
NELFE-214ENST00000625905 RIMBP3Q9UFD9 1639 aa15.63■□□□□ 0.09
NELFE-214ENST00000625905 ARHGEF11O15085 1522 aa15.63■□□□□ 0.09
NELFE-214ENST00000625905 IGF1RP08069 1367 aa15.62■□□□□ 0.09
NELFE-214ENST00000625905 NUP160Q12769 1436 aa15.62■□□□□ 0.09
NELFE-214ENST00000625905 CHIC1Q5VXU3 224 aa15.61■□□□□ 0.09
NELFE-214ENST00000625905 RUSC2Q8N2Y8 1516 aa15.58■□□□□ 0.09
NELFE-214ENST00000625905 CARMIL1Q5VZK9 1371 aa15.56■□□□□ 0.08
NELFE-214ENST00000625905 SHROOM2Q13796 1616 aa15.53■□□□□ 0.08
NELFE-214ENST00000625905 ARAP1Q96P48 1450 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms