RNA–Protein interactions for RNA: ENST00000620828.4

FMR1-217, Transcript of fragile X mental retardation 1, humanhuman

TSL 1 (best)

Gene FMR1, Length 4,830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FMR1-217ENST00000620828 NISCHQ9Y2I1 1504 aa14.69□□□□□ -0.06
FMR1-217ENST00000620828 CCDC180Q9P1Z9 1646 aa13.27□□□□□ -0.29
FMR1-217ENST00000620828 ABCC9O60706 1549 aa12.6□□□□□ -0.39
FMR1-217ENST00000620828 MYO15BQ96JP2 1530 aa12.42□□□□□ -0.42
FMR1-217ENST00000620828 NACADO15069 1562 aa12.34□□□□□ -0.43
FMR1-217ENST00000620828 DCAF1Q9Y4B6 1507 aa12.32□□□□□ -0.44
FMR1-217ENST00000620828 RB1CC1Q8TDY2 1594 aa12.3□□□□□ -0.44
FMR1-217ENST00000620828 UNC13AQ9UPW8 1703 aa12.3□□□□□ -0.44
FMR1-217ENST00000620828 ZCCHC6Q5VYS8 1495 aaKnown RBP12.29□□□□□ -0.44
FMR1-217ENST00000620828 BICRAQ9NZM4 1560 aa12.12□□□□□ -0.47
FMR1-217ENST00000620828 SHROOM4Q9ULL8 1493 aa11.98□□□□□ -0.49
FMR1-217ENST00000620828 SCRIBQ14160 1630 aa11.82□□□□□ -0.52
FMR1-217ENST00000620828 DNAJC5BQ9UF47 199 aa11.69□□□□□ -0.54
FMR1-217ENST00000620828 EIF4G1Q04637 1599 aaKnown RBP11.65□□□□□ -0.54
FMR1-217ENST00000620828 PABPN1Q86U42 306 aaKnown RBP eCLIP11.62□□□□□ -0.55
FMR1-217ENST00000620828 CC2D2AQ9P2K1 1620 aa11.61□□□□□ -0.55
FMR1-217ENST00000620828 DCAF8L2P0C7V8 631 aa11.58□□□□□ -0.56
FMR1-217ENST00000620828 PEG3Q9GZU2 1588 aa11.49□□□□□ -0.57
FMR1-217ENST00000620828 SMARCA4P51532 1647 aa11.45□□□□□ -0.58
FMR1-217ENST00000620828 CECR2Q9BXF3 1484 aa11.38□□□□□ -0.59
FMR1-217ENST00000620828 HMGXB3Q12766 1538 aa11.37□□□□□ -0.59
FMR1-217ENST00000620828 NCAPD3P42695 1498 aa11.36□□□□□ -0.59
FMR1-217ENST00000620828 BAZ1AQ9NRL2 1556 aaPredicted RBP11.35□□□□□ -0.59
FMR1-217ENST00000620828 ATAD2BQ9ULI0 1458 aa11.32□□□□□ -0.6
FMR1-217ENST00000620828 SMARCA2P51531 1590 aa11.3□□□□□ -0.6
FMR1-217ENST00000620828 MROH2BQ7Z745 1585 aa11.29□□□□□ -0.6
FMR1-217ENST00000620828 WIZO95785 1651 aa11.19□□□□□ -0.62
FMR1-217ENST00000620828 BAZ1BQ9UIG0 1483 aaKnown RBP11.11□□□□□ -0.63
FMR1-217ENST00000620828 RSF1Q96T23 1441 aaPredicted RBP11.11□□□□□ -0.63
FMR1-217ENST00000620828 PRDM2Q13029 1718 aa11.09□□□□□ -0.63
FMR1-217ENST00000620828 TOP2AP11388 1531 aaKnown RBP11.09□□□□□ -0.63
FMR1-217ENST00000620828 LAMC3Q9Y6N6 1575 aa11.08□□□□□ -0.64
FMR1-217ENST00000620828 THOC2Q8NI27 1593 aaKnown RBP11.07□□□□□ -0.64
FMR1-217ENST00000620828 KIF21AQ7Z4S6 1674 aa11.03□□□□□ -0.64
FMR1-217ENST00000620828 NESP48681 1621 aa10.99□□□□□ -0.65
FMR1-217ENST00000620828 CUX2O14529 1486 aa10.95□□□□□ -0.66
FMR1-217ENST00000620828 CFTRP13569 1480 aa10.94□□□□□ -0.66
FMR1-217ENST00000620828 WDR62O43379 1518 aa10.92□□□□□ -0.66
FMR1-217ENST00000620828 CADPSQ9ULU8 1353 aa10.89□□□□□ -0.67
FMR1-217ENST00000620828 CCDC88BA6NC98 1476 aa10.88□□□□□ -0.67
FMR1-217ENST00000620828 PDS5BQ9NTI5 1447 aa10.81□□□□□ -0.68
FMR1-217ENST00000620828 MRC2Q9UBG0 1479 aa10.8□□□□□ -0.68
FMR1-217ENST00000620828 URB2Q14146 1524 aaKnown RBP10.78□□□□□ -0.68
FMR1-217ENST00000620828 FANCD2Q9BXW9 1451 aa10.77□□□□□ -0.68
FMR1-217ENST00000620828 ERCC6Q03468 1493 aa10.76□□□□□ -0.69
FMR1-217ENST00000620828 CEP164Q9UPV0 1460 aa10.74□□□□□ -0.69
FMR1-217ENST00000620828 WDR97A6NE52 1622 aa10.72□□□□□ -0.69
FMR1-217ENST00000620828 TARBP1Q13395 1621 aaKnown RBP10.71□□□□□ -0.69
FMR1-217ENST00000620828 DNMBPQ6XZF7 1577 aa10.7□□□□□ -0.7
FMR1-217ENST00000620828 TOPBP1Q92547 1522 aa10.66□□□□□ -0.7
FMR1-217ENST00000620828 BIVM-ERCC5R4GMW8 1640 aa10.64□□□□□ -0.71
FMR1-217ENST00000620828 ABCC8Q09428 1581 aa10.63□□□□□ -0.71
FMR1-217ENST00000620828 CUX1P39880 1505 aa10.62□□□□□ -0.71
FMR1-217ENST00000620828 EIF4G3O43432 1585 aaKnown RBP10.58□□□□□ -0.72
FMR1-217ENST00000620828 IFT140Q96RY7 1462 aa10.58□□□□□ -0.72
FMR1-217ENST00000620828 TOP2BQ02880 1626 aa10.56□□□□□ -0.72
FMR1-217ENST00000620828 POLA1P09884 1462 aaPredicted RBP10.56□□□□□ -0.72
FMR1-217ENST00000620828 ABCA5Q8WWZ7 1642 aa10.55□□□□□ -0.72
FMR1-217ENST00000620828 ZNF608Q9ULD9 1512 aaPredicted RBP10.53□□□□□ -0.72
FMR1-217ENST00000620828 SYNJ1O43426 1573 aa10.52□□□□□ -0.73
FMR1-217ENST00000620828 PBRM1Q86U86 1689 aa10.52□□□□□ -0.73
FMR1-217ENST00000620828 DNAJC5Q9H3Z4 198 aa10.5□□□□□ -0.73
FMR1-217ENST00000620828 CHD1O14646 1710 aa10.49□□□□□ -0.73
FMR1-217ENST00000620828 FGD5Q6ZNL6 1462 aa10.48□□□□□ -0.73
FMR1-217ENST00000620828 ABCA10Q8WWZ4 1543 aa10.48□□□□□ -0.73
FMR1-217ENST00000620828 RAD54L2Q9Y4B4 1467 aa10.44□□□□□ -0.74
FMR1-217ENST00000620828 CLASP1Q7Z460 1538 aa10.43□□□□□ -0.74
FMR1-217ENST00000620828 ADAMTS12P58397 1594 aa10.39□□□□□ -0.75
FMR1-217ENST00000620828 SOGA1O94964 1423 aa10.38□□□□□ -0.75
FMR1-217ENST00000620828 MAGI1Q96QZ7 1491 aaPredicted RBP10.38□□□□□ -0.75
FMR1-217ENST00000620828 AQRO60306 1485 aaKnown RBP eCLIP10.37□□□□□ -0.757e-6■■□□□ 12.2
FMR1-217ENST00000620828 SHROOM2Q13796 1616 aa10.37□□□□□ -0.75
FMR1-217ENST00000620828 ERICH3Q5RHP9 1530 aa10.36□□□□□ -0.75
FMR1-217ENST00000620828 WRNQ14191 1432 aaPredicted RBP eCLIP10.36□□□□□ -0.75
FMR1-217ENST00000620828 RIMBP3CA6NJZ7 1639 aa10.35□□□□□ -0.75
FMR1-217ENST00000620828 RIMBP3BA6NNM3 1639 aa10.35□□□□□ -0.75
FMR1-217ENST00000620828 RIMBP3Q9UFD9 1639 aa10.35□□□□□ -0.75
FMR1-217ENST00000620828 GRIN2BQ13224 1484 aa10.34□□□□□ -0.75
FMR1-217ENST00000620828 SNAPC4Q5SXM2 1469 aa10.33□□□□□ -0.76
FMR1-217ENST00000620828 SYNJ2O15056 1496 aa10.31□□□□□ -0.76
FMR1-217ENST00000620828 GAPVD1Q14C86 1478 aa10.31□□□□□ -0.76
FMR1-217ENST00000620828 CEP170Q5SW79 1584 aa10.3□□□□□ -0.76
FMR1-217ENST00000620828 SUPT5HO00267 1087 aaKnown RBP10.29□□□□□ -0.76
FMR1-217ENST00000620828 NUP160Q12769 1436 aa10.28□□□□□ -0.76
FMR1-217ENST00000620828 CUL7Q14999 1698 aa10.28□□□□□ -0.76
FMR1-217ENST00000620828 TDRD9Q8NDG6 1382 aaKnown RBP10.26□□□□□ -0.77
FMR1-217ENST00000620828 ARHGEF11O15085 1522 aa10.26□□□□□ -0.77
FMR1-217ENST00000620828 RUSC2Q8N2Y8 1516 aa10.26□□□□□ -0.77
FMR1-217ENST00000620828 GRIN2AQ12879 1464 aa10.24□□□□□ -0.77
FMR1-217ENST00000620828 FHAD1B1AJZ9 1412 aa10.21□□□□□ -0.77
FMR1-217ENST00000620828 ARAP1Q96P48 1450 aa10.2□□□□□ -0.78
FMR1-217ENST00000620828 OSCARQ8IYS5 282 aa10.19□□□□□ -0.78
FMR1-217ENST00000620828 ERCC6L2Q5T890 1561 aa10.18□□□□□ -0.78
FMR1-217ENST00000620828 IGF1RP08069 1367 aa10.16□□□□□ -0.78
FMR1-217ENST00000620828 CTTNBP2Q8WZ74 1663 aa10.12□□□□□ -0.79
FMR1-217ENST00000620828 KIF27Q86VH2 1401 aa10.1□□□□□ -0.79
FMR1-217ENST00000620828 PRXQ9BXM0 1461 aa10.09□□□□□ -0.79
FMR1-217ENST00000620828 KIAA0586Q9BVV6 1533 aa10.08□□□□□ -0.8
FMR1-217ENST00000620828 UGGT2Q9NYU1 1516 aa10.07□□□□□ -0.8
FMR1-217ENST00000620828 ADCY10Q96PN6 1610 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms