RNA–Protein interactions for RNA: ENST00000620789.4

LITAF-220, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 5 BASIC

Gene LITAF, Length 692 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-220ENST00000620789 NISCHQ9Y2I1 1504 aa44.24■■■■■ 4.67
LITAF-220ENST00000620789 CCDC180Q9P1Z9 1646 aa39.29■■■■□ 3.88
LITAF-220ENST00000620789 ABCC9O60706 1549 aa38.28■■■■□ 3.72
LITAF-220ENST00000620789 RB1CC1Q8TDY2 1594 aa36.91■■■■□ 3.5
LITAF-220ENST00000620789 NACADO15069 1562 aa36.9■■■■□ 3.5
LITAF-220ENST00000620789 ZCCHC6Q5VYS8 1495 aaKnown RBP36.89■■■■□ 3.5
LITAF-220ENST00000620789 DCAF8L2P0C7V8 631 aa36.85■■■■□ 3.49
LITAF-220ENST00000620789 MYO15BQ96JP2 1530 aa36.73■■■■□ 3.47
LITAF-220ENST00000620789 DCAF1Q9Y4B6 1507 aa36.63■■■■□ 3.45
LITAF-220ENST00000620789 UNC13AQ9UPW8 1703 aa36.08■■■■□ 3.37
LITAF-220ENST00000620789 SCRIBQ14160 1630 aa35.84■■■■□ 3.33
LITAF-220ENST00000620789 BICRAQ9NZM4 1560 aa35.79■■■■□ 3.32
LITAF-220ENST00000620789 PABPN1Q86U42 306 aaKnown RBP eCLIP35.78■■■■□ 3.32
LITAF-220ENST00000620789 SHROOM4Q9ULL8 1493 aa35.44■■■■□ 3.26
LITAF-220ENST00000620789 DNAJC5BQ9UF47 199 aa34.99■■■■□ 3.19
LITAF-220ENST00000620789 EIF4G1Q04637 1599 aaKnown RBP34.83■■■■□ 3.17
LITAF-220ENST00000620789 CC2D2AQ9P2K1 1620 aa34.65■■■■□ 3.14
LITAF-220ENST00000620789 CECR2Q9BXF3 1484 aa34.44■■■■□ 3.1
LITAF-220ENST00000620789 SMARCA4P51532 1647 aa34.31■■■■□ 3.08
LITAF-220ENST00000620789 BAZ1AQ9NRL2 1556 aaPredicted RBP34.28■■■■□ 3.08
LITAF-220ENST00000620789 MROH2BQ7Z745 1585 aa34.1■■■■□ 3.05
LITAF-220ENST00000620789 ATAD2BQ9ULI0 1458 aa34.07■■■■□ 3.05
LITAF-220ENST00000620789 SMARCA2P51531 1590 aa34.05■■■■□ 3.04
LITAF-220ENST00000620789 NCAPD3P42695 1498 aa34.04■■■■□ 3.04
LITAF-220ENST00000620789 PEG3Q9GZU2 1588 aa33.98■■■■□ 3.03
LITAF-220ENST00000620789 HMGXB3Q12766 1538 aa33.9■■■■□ 3.02
LITAF-220ENST00000620789 BAZ1BQ9UIG0 1483 aaKnown RBP33.81■■■■□ 3
LITAF-220ENST00000620789 RSF1Q96T23 1441 aaPredicted RBP33.75■■■□□ 2.99
LITAF-220ENST00000620789 WIZO95785 1651 aa33.74■■■□□ 2.99
LITAF-220ENST00000620789 TOP2AP11388 1531 aaKnown RBP33.39■■■□□ 2.94
LITAF-220ENST00000620789 NESP48681 1621 aa33.17■■■□□ 2.9
LITAF-220ENST00000620789 LAMC3Q9Y6N6 1575 aa33.13■■■□□ 2.89
LITAF-220ENST00000620789 CADPSQ9ULU8 1353 aa33.05■■■□□ 2.88
LITAF-220ENST00000620789 ERCC6Q03468 1493 aa32.99■■■□□ 2.87
LITAF-220ENST00000620789 CCDC88BA6NC98 1476 aa32.99■■■□□ 2.87
LITAF-220ENST00000620789 SUPT5HO00267 1087 aaKnown RBP32.96■■■□□ 2.87
LITAF-220ENST00000620789 CFTRP13569 1480 aa32.89■■■□□ 2.86
LITAF-220ENST00000620789 PDS5BQ9NTI5 1447 aa32.89■■■□□ 2.86
LITAF-220ENST00000620789 KIF21AQ7Z4S6 1674 aa32.8■■■□□ 2.84
LITAF-220ENST00000620789 FANCD2Q9BXW9 1451 aa32.67■■■□□ 2.82
LITAF-220ENST00000620789 PRDM2Q13029 1718 aa32.67■■■□□ 2.82
LITAF-220ENST00000620789 THOC2Q8NI27 1593 aaKnown RBP32.66■■■□□ 2.82
LITAF-220ENST00000620789 CEP164Q9UPV0 1460 aa32.63■■■□□ 2.81
LITAF-220ENST00000620789 CUX2O14529 1486 aa32.61■■■□□ 2.81
LITAF-220ENST00000620789 MRC2Q9UBG0 1479 aa32.55■■■□□ 2.8
LITAF-220ENST00000620789 WDR62O43379 1518 aa32.45■■■□□ 2.78
LITAF-220ENST00000620789 URB2Q14146 1524 aaKnown RBP32.34■■■□□ 2.77
LITAF-220ENST00000620789 ABCC8Q09428 1581 aa32.18■■■□□ 2.74
LITAF-220ENST00000620789 TOPBP1Q92547 1522 aa32.17■■■□□ 2.74
LITAF-220ENST00000620789 DNMBPQ6XZF7 1577 aa32.15■■■□□ 2.74
LITAF-220ENST00000620789 CUX1P39880 1505 aa31.98■■■□□ 2.71
LITAF-220ENST00000620789 IFT140Q96RY7 1462 aa31.93■■■□□ 2.7
LITAF-220ENST00000620789 POLA1P09884 1462 aaPredicted RBP31.91■■■□□ 2.7
LITAF-220ENST00000620789 FGD5Q6ZNL6 1462 aa31.85■■■□□ 2.69
LITAF-220ENST00000620789 TARBP1Q13395 1621 aaKnown RBP31.82■■■□□ 2.69
LITAF-220ENST00000620789 WRNQ14191 1432 aaPredicted RBP eCLIP31.82■■■□□ 2.68
LITAF-220ENST00000620789 ZNF608Q9ULD9 1512 aaPredicted RBP31.77■■■□□ 2.68
LITAF-220ENST00000620789 SOGA1O94964 1423 aa31.76■■■□□ 2.68
LITAF-220ENST00000620789 TOP2BQ02880 1626 aa31.75■■■□□ 2.67
LITAF-220ENST00000620789 BIVM-ERCC5R4GMW8 1640 aa31.75■■■□□ 2.67
LITAF-220ENST00000620789 RAD54L2Q9Y4B4 1467 aa31.75■■■□□ 2.67
LITAF-220ENST00000620789 SYNJ1O43426 1573 aa31.75■■■□□ 2.67
LITAF-220ENST00000620789 EIF4G3O43432 1585 aaKnown RBP31.68■■■□□ 2.66
LITAF-220ENST00000620789 WDR97A6NE52 1622 aa31.6■■■□□ 2.65
LITAF-220ENST00000620789 AQRO60306 1485 aaKnown RBP eCLIP31.6■■■□□ 2.652e-8■■■□□ 18.1
LITAF-220ENST00000620789 TDRD9Q8NDG6 1382 aaKnown RBP31.56■■■□□ 2.64
LITAF-220ENST00000620789 ABCA10Q8WWZ4 1543 aa31.54■■■□□ 2.64
LITAF-220ENST00000620789 ABCA5Q8WWZ7 1642 aa31.43■■■□□ 2.62
LITAF-220ENST00000620789 GAPVD1Q14C86 1478 aa31.41■■■□□ 2.62
LITAF-220ENST00000620789 DNAJC5Q9H3Z4 198 aa31.41■■■□□ 2.62
LITAF-220ENST00000620789 GRIN2BQ13224 1484 aa31.39■■■□□ 2.62
LITAF-220ENST00000620789 PBRM1Q86U86 1689 aa31.35■■■□□ 2.61
LITAF-220ENST00000620789 SNAPC4Q5SXM2 1469 aa31.33■■■□□ 2.61
LITAF-220ENST00000620789 MAGI1Q96QZ7 1491 aaPredicted RBP31.3■■■□□ 2.6
LITAF-220ENST00000620789 OSCARQ8IYS5 282 aa31.25■■■□□ 2.59
LITAF-220ENST00000620789 CHD1O14646 1710 aa31.24■■■□□ 2.59
LITAF-220ENST00000620789 FBLN2P98095 1184 aa31.18■■■□□ 2.58
LITAF-220ENST00000620789 ERICH3Q5RHP9 1530 aa31.18■■■□□ 2.58
LITAF-220ENST00000620789 SYNJ2O15056 1496 aa31.17■■■□□ 2.58
LITAF-220ENST00000620789 KIF27Q86VH2 1401 aa31.15■■■□□ 2.58
LITAF-220ENST00000620789 TRIM41Q8WV44 630 aa31.13■■■□□ 2.57
LITAF-220ENST00000620789 CHMP7Q8WUX9 453 aaPredicted RBP31.12■■■□□ 2.57
LITAF-220ENST00000620789 ADAMTS12P58397 1594 aa31.12■■■□□ 2.57
LITAF-220ENST00000620789 FHAD1B1AJZ9 1412 aa31.06■■■□□ 2.56
LITAF-220ENST00000620789 IGF1RP08069 1367 aa30.99■■■□□ 2.55
LITAF-220ENST00000620789 GRIN2AQ12879 1464 aa30.99■■■□□ 2.55
LITAF-220ENST00000620789 CUL7Q14999 1698 aa30.93■■■□□ 2.54
LITAF-220ENST00000620789 CLASP1Q7Z460 1538 aa30.91■■■□□ 2.54
LITAF-220ENST00000620789 RUSC2Q8N2Y8 1516 aa30.89■■■□□ 2.54
LITAF-220ENST00000620789 CHIC1Q5VXU3 224 aa30.85■■■□□ 2.53
LITAF-220ENST00000620789 NUP160Q12769 1436 aa30.84■■■□□ 2.53
LITAF-220ENST00000620789 CEP170Q5SW79 1584 aa30.83■■■□□ 2.53
LITAF-220ENST00000620789 CARMIL1Q5VZK9 1371 aa30.8■■■□□ 2.52
LITAF-220ENST00000620789 ARHGEF11O15085 1522 aa30.78■■■□□ 2.52
LITAF-220ENST00000620789 RIMBP3CA6NJZ7 1639 aa30.76■■■□□ 2.52
LITAF-220ENST00000620789 RIMBP3BA6NNM3 1639 aa30.76■■■□□ 2.52
LITAF-220ENST00000620789 RIMBP3Q9UFD9 1639 aa30.76■■■□□ 2.52
LITAF-220ENST00000620789 RAPGEF2Q9Y4G8 1499 aa30.65■■■□□ 2.5
LITAF-220ENST00000620789 EEA1Q15075 1411 aa30.64■■■□□ 2.49
LITAF-220ENST00000620789 SHROOM2Q13796 1616 aa30.61■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms