RNA–Protein interactions for RNA: ENST00000620739.4

TP53-226, Transcript of tumor protein p53, humanhuman

TSL 1 (best) BASIC

Gene TP53, Length 2,579 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TP53-226ENST00000620739 NISCHQ9Y2I1 1504 aa25.01■■□□□ 1.59
TP53-226ENST00000620739 CCDC180Q9P1Z9 1646 aa21.49■■□□□ 1.03
TP53-226ENST00000620739 CHIC1Q5VXU3 224 aa21.35■■□□□ 1.01
TP53-226ENST00000620739 DCAF8L2P0C7V8 631 aa21.06■□□□□ 0.96
TP53-226ENST00000620739 ZCCHC6Q5VYS8 1495 aaKnown RBP21■□□□□ 0.95
TP53-226ENST00000620739 SHROOM4Q9ULL8 1493 aa20.9■□□□□ 0.94
TP53-226ENST00000620739 ABCC9O60706 1549 aa20.64■□□□□ 0.9
TP53-226ENST00000620739 DCAF1Q9Y4B6 1507 aa20.48■□□□□ 0.87
TP53-226ENST00000620739 AEBP2Q6ZN18 517 aaPredicted RBP20.33■□□□□ 0.85
TP53-226ENST00000620739 SUPT5HO00267 1087 aaKnown RBP20.18■□□□□ 0.82
TP53-226ENST00000620739 MYO15BQ96JP2 1530 aa20.15■□□□□ 0.82
TP53-226ENST00000620739 SCRIBQ14160 1630 aa20.1■□□□□ 0.81
TP53-226ENST00000620739 NACADO15069 1562 aa20.09■□□□□ 0.81
TP53-226ENST00000620739 RB1CC1Q8TDY2 1594 aa19.91■□□□□ 0.78
TP53-226ENST00000620739 PABPN1Q86U42 306 aaKnown RBP eCLIP19.66■□□□□ 0.74
TP53-226ENST00000620739 CECR2Q9BXF3 1484 aa19.61■□□□□ 0.73
TP53-226ENST00000620739 RSF1Q96T23 1441 aaPredicted RBP19.56■□□□□ 0.72
TP53-226ENST00000620739 UNC13AQ9UPW8 1703 aa19.54■□□□□ 0.72
TP53-226ENST00000620739 MROH2BQ7Z745 1585 aa19.43■□□□□ 0.7
TP53-226ENST00000620739 BICRAQ9NZM4 1560 aa19.42■□□□□ 0.7
TP53-226ENST00000620739 PELP1Q8IZL8 1130 aaKnown RBP19.35■□□□□ 0.69
TP53-226ENST00000620739 WIZO95785 1651 aa19.26■□□□□ 0.67
TP53-226ENST00000620739 BAZ1AQ9NRL2 1556 aaPredicted RBP19.24■□□□□ 0.67
TP53-226ENST00000620739 SMARCA4P51532 1647 aa19.15■□□□□ 0.66
TP53-226ENST00000620739 PHF23Q9BUL5 403 aaPredicted RBP19.15■□□□□ 0.66
TP53-226ENST00000620739 MYT1Q01538 1121 aa19.12■□□□□ 0.65
TP53-226ENST00000620739 SLC24A1O60721 1099 aa19.1■□□□□ 0.65
TP53-226ENST00000620739 EHMT2Q96KQ7 1210 aa19.06■□□□□ 0.64
TP53-226ENST00000620739 TOP2AP11388 1531 aaKnown RBP18.92■□□□□ 0.62
TP53-226ENST00000620739 ATAD2BQ9ULI0 1458 aa18.89■□□□□ 0.61
TP53-226ENST00000620739 CCDC88BA6NC98 1476 aa18.89■□□□□ 0.61
TP53-226ENST00000620739 TRIM41Q8WV44 630 aa18.83■□□□□ 0.6
TP53-226ENST00000620739 EIF4G1Q04637 1599 aaKnown RBP18.82■□□□□ 0.6
TP53-226ENST00000620739 PEG3Q9GZU2 1588 aa18.82■□□□□ 0.6
TP53-226ENST00000620739 SMARCA2P51531 1590 aa18.81■□□□□ 0.6
TP53-226ENST00000620739 BAZ1BQ9UIG0 1483 aaKnown RBP18.78■□□□□ 0.6
TP53-226ENST00000620739 LOC105371045A0A1W2PR82 267 aa18.71■□□□□ 0.59
TP53-226ENST00000620739 FAM9AQ8IZU1 332 aaPredicted RBP18.68■□□□□ 0.58
TP53-226ENST00000620739 NCAPD3P42695 1498 aa18.64■□□□□ 0.58
TP53-226ENST00000620739 ABCC8Q09428 1581 aa18.6■□□□□ 0.57
TP53-226ENST00000620739 CC2D2AQ9P2K1 1620 aa18.53■□□□□ 0.56
TP53-226ENST00000620739 HMGXB3Q12766 1538 aa18.52■□□□□ 0.56
TP53-226ENST00000620739 TTBK1Q5TCY1 1321 aaPredicted RBP18.5■□□□□ 0.55
TP53-226ENST00000620739 DNAJC5BQ9UF47 199 aa18.44■□□□□ 0.54
TP53-226ENST00000620739 WRNQ14191 1432 aaPredicted RBP eCLIP18.38■□□□□ 0.53
TP53-226ENST00000620739 PRKCSHP14314 528 aaPredicted RBP18.36■□□□□ 0.53
TP53-226ENST00000620739 SOGA1O94964 1423 aa18.33■□□□□ 0.53
TP53-226ENST00000620739 CFTRP13569 1480 aa18.29■□□□□ 0.52
TP53-226ENST00000620739 SYNJ1O43426 1573 aa18.29■□□□□ 0.52
TP53-226ENST00000620739 RUSC2Q8N2Y8 1516 aa18.29■□□□□ 0.52
TP53-226ENST00000620739 CADPSQ9ULU8 1353 aa18.26■□□□□ 0.51
TP53-226ENST00000620739 NESP48681 1621 aa18.18■□□□□ 0.5
TP53-226ENST00000620739 CSRNP3Q8WYN3 585 aa18.16■□□□□ 0.5
TP53-226ENST00000620739 CUX1P39880 1505 aa18.12■□□□□ 0.49
TP53-226ENST00000620739 TOP2BQ02880 1626 aa18.09■□□□□ 0.49
TP53-226ENST00000620739 PLPPR3Q6T4P5 718 aa18.07■□□□□ 0.48
TP53-226ENST00000620739 FANCD2Q9BXW9 1451 aa18.05■□□□□ 0.48
TP53-226ENST00000620739 UBTFP17480 764 aaKnown RBP18.04■□□□□ 0.48
TP53-226ENST00000620739 EEA1Q15075 1411 aa18.01■□□□□ 0.47
TP53-226ENST00000620739 BIVM-ERCC5R4GMW8 1640 aa18.01■□□□□ 0.47
TP53-226ENST00000620739 KCNA4P22459 653 aa17.99■□□□□ 0.47
TP53-226ENST00000620739 PCGF6Q9BYE7 350 aa17.95■□□□□ 0.46
TP53-226ENST00000620739 PRDM2Q13029 1718 aa17.94■□□□□ 0.46
TP53-226ENST00000620739 PPARGC1BQ86YN6 1023 aaKnown RBP17.93■□□□□ 0.46
TP53-226ENST00000620739 RANGAP1P46060 587 aaPredicted RBP17.92■□□□□ 0.46
TP53-226ENST00000620739 FGD5Q6ZNL6 1462 aa17.91■□□□□ 0.46
TP53-226ENST00000620739 LAMC3Q9Y6N6 1575 aa17.91■□□□□ 0.46
TP53-226ENST00000620739 RAPGEF2Q9Y4G8 1499 aa17.89■□□□□ 0.45
TP53-226ENST00000620739 APLP2Q06481 763 aa17.89■□□□□ 0.45
TP53-226ENST00000620739 TNIKQ9UKE5 1360 aa17.88■□□□□ 0.45
TP53-226ENST00000620739 GOLGA3Q08378 1498 aa17.88■□□□□ 0.45
TP53-226ENST00000620739 CEP164Q9UPV0 1460 aa17.87■□□□□ 0.45
TP53-226ENST00000620739 CEP162Q5TB80 1403 aa17.87■□□□□ 0.45
TP53-226ENST00000620739 RTN4Q9NQC3 1192 aaKnown RBP17.86■□□□□ 0.45
TP53-226ENST00000620739 KIF27Q86VH2 1401 aa17.86■□□□□ 0.45
TP53-226ENST00000620739 PDS5BQ9NTI5 1447 aa17.86■□□□□ 0.45
TP53-226ENST00000620739 CUX2O14529 1486 aa17.86■□□□□ 0.45
TP53-226ENST00000620739 RAD54L2Q9Y4B4 1467 aa17.85■□□□□ 0.45
TP53-226ENST00000620739 TOPBP1Q92547 1522 aa17.85■□□□□ 0.45
TP53-226ENST00000620739 ERICH6Q7L0X2 663 aa17.84■□□□□ 0.45
TP53-226ENST00000620739 URB2Q14146 1524 aaKnown RBP17.83■□□□□ 0.44
TP53-226ENST00000620739 POLA1P09884 1462 aaPredicted RBP17.8■□□□□ 0.44
TP53-226ENST00000620739 DNMBPQ6XZF7 1577 aa17.79■□□□□ 0.44
TP53-226ENST00000620739 IGF1RP08069 1367 aa17.79■□□□□ 0.44
TP53-226ENST00000620739 KIF21BO75037 1637 aa17.78■□□□□ 0.44
TP53-226ENST00000620739 PRXQ9BXM0 1461 aa17.78■□□□□ 0.44
TP53-226ENST00000620739 KIF21AQ7Z4S6 1674 aa17.76■□□□□ 0.43
TP53-226ENST00000620739 TDRD9Q8NDG6 1382 aaKnown RBP17.72■□□□□ 0.43
TP53-226ENST00000620739 TRIM26Q12899 539 aaPredicted RBP17.72■□□□□ 0.43
TP53-226ENST00000620739 CLIP1P30622 1438 aa17.69■□□□□ 0.42
TP53-226ENST00000620739 CARMIL1Q5VZK9 1371 aa17.68■□□□□ 0.42
TP53-226ENST00000620739 ABCA10Q8WWZ4 1543 aa17.67■□□□□ 0.42
TP53-226ENST00000620739 BCL11AQ9H165 835 aa17.63■□□□□ 0.41
TP53-226ENST00000620739 ERICH3Q5RHP9 1530 aa17.63■□□□□ 0.41
TP53-226ENST00000620739 ERCC6Q03468 1493 aa17.6■□□□□ 0.41
TP53-226ENST00000620739 MRC2Q9UBG0 1479 aa17.6■□□□□ 0.41
TP53-226ENST00000620739 AMER1Q5JTC6 1135 aaPredicted RBP17.56■□□□□ 0.4
TP53-226ENST00000620739 AQRO60306 1485 aaKnown RBP eCLIP17.55■□□□□ 0.48e-7■■■□□ 16.1
TP53-226ENST00000620739 GAPVD1Q14C86 1478 aa17.54■□□□□ 0.4
TP53-226ENST00000620739 TARBP1Q13395 1621 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms