RNA–Protein interactions for RNA: ENST00000614659.1

SNPH-203, Transcript of syntaphilin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SNPH, Length 5,354 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNPH-203ENST00000614659 NISCHQ9Y2I1 1504 aa25.95■■□□□ 1.74
SNPH-203ENST00000614659 DCAF8L2P0C7V8 631 aa25.84■■□□□ 1.73
SNPH-203ENST00000614659 SUPT5HO00267 1087 aaKnown RBP24.16■■□□□ 1.46
SNPH-203ENST00000614659 SHROOM4Q9ULL8 1493 aa23.89■■□□□ 1.41
SNPH-203ENST00000614659 FAM9AQ8IZU1 332 aaPredicted RBP23.47■■□□□ 1.35
SNPH-203ENST00000614659 APLP2Q06481 763 aa23.03■■□□□ 1.28
SNPH-203ENST00000614659 PELP1Q8IZL8 1130 aaKnown RBP22.99■■□□□ 1.27
SNPH-203ENST00000614659 ZEB1P37275 1124 aaPredicted RBP22.74■■□□□ 1.23
SNPH-203ENST00000614659 EHMT2Q96KQ7 1210 aa22.72■■□□□ 1.23
SNPH-203ENST00000614659 PCGF6Q9BYE7 350 aa22.65■■□□□ 1.22
SNPH-203ENST00000614659 TRIM41Q8WV44 630 aa22.64■■□□□ 1.21
SNPH-203ENST00000614659 ABCC9O60706 1549 aa22.44■■□□□ 1.18
SNPH-203ENST00000614659 MYT1Q01538 1121 aa22.25■■□□□ 1.15
SNPH-203ENST00000614659 CENPBP07199 599 aaPredicted RBP22.24■■□□□ 1.15
SNPH-203ENST00000614659 ATP1B4Q9UN42 357 aaPredicted RBP22.2■■□□□ 1.14
SNPH-203ENST00000614659 CCER1Q8TC90 406 aaPredicted RBP22.19■■□□□ 1.14
SNPH-203ENST00000614659 UBTFP17480 764 aaKnown RBP22.16■■□□□ 1.14
SNPH-203ENST00000614659 TRIM26Q12899 539 aaPredicted RBP22.16■■□□□ 1.14
SNPH-203ENST00000614659 CHIC1Q5VXU3 224 aa22.11■■□□□ 1.13
SNPH-203ENST00000614659 RANGAP1P46060 587 aaPredicted RBP22.1■■□□□ 1.13
SNPH-203ENST00000614659 TTBK1Q5TCY1 1321 aaPredicted RBP22.06■■□□□ 1.12
SNPH-203ENST00000614659 HRCP23327 699 aa22■■□□□ 1.11
SNPH-203ENST00000614659 ERICH6Q7L0X2 663 aa21.99■■□□□ 1.11
SNPH-203ENST00000614659 PABPN1Q86U42 306 aaKnown RBP eCLIP21.96■■□□□ 1.11
SNPH-203ENST00000614659 CCDC180Q9P1Z9 1646 aa21.77■■□□□ 1.08
SNPH-203ENST00000614659 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.74■■□□□ 1.07
SNPH-203ENST00000614659 HNRNPUL2Q1KMD3 747 aaKnown RBP21.74■■□□□ 1.07
SNPH-203ENST00000614659 MYT1LQ9UL68 1186 aa21.71■■□□□ 1.07
SNPH-203ENST00000614659 LOC105371045A0A1W2PR82 267 aa21.67■■□□□ 1.06
SNPH-203ENST00000614659 ZCCHC6Q5VYS8 1495 aaKnown RBP21.66■■□□□ 1.06
SNPH-203ENST00000614659 NEFLP07196 543 aa21.53■■□□□ 1.04
SNPH-203ENST00000614659 PPARGC1BQ86YN6 1023 aaKnown RBP21.51■■□□□ 1.03
SNPH-203ENST00000614659 YTHDC1Q96MU7 727 aaKnown RBP21.42■■□□□ 1.02
SNPH-203ENST00000614659 RB1CC1Q8TDY2 1594 aa21.39■■□□□ 1.01
SNPH-203ENST00000614659 SCRIBQ14160 1630 aa21.34■■□□□ 1.01
SNPH-203ENST00000614659 FBLN2P98095 1184 aa21.25■□□□□ 0.99
SNPH-203ENST00000614659 DCAF1Q9Y4B6 1507 aa21.19■□□□□ 0.98
SNPH-203ENST00000614659 NACADO15069 1562 aa21.15■□□□□ 0.98
SNPH-203ENST00000614659 ITGAEP38570 1179 aa21.13■□□□□ 0.97
SNPH-203ENST00000614659 DIEXFQ68CQ4 756 aaKnown RBP21.12■□□□□ 0.97
SNPH-203ENST00000614659 CSRNP3Q8WYN3 585 aa20.98■□□□□ 0.95
SNPH-203ENST00000614659 CDK11AQ9UQ88 783 aaPredicted RBP20.94■□□□□ 0.94
SNPH-203ENST00000614659 NPM1P06748 294 aaKnown RBP eCLIP20.93■□□□□ 0.94
SNPH-203ENST00000614659 FAM50AQ14320 339 aaKnown RBP20.87■□□□□ 0.93
SNPH-203ENST00000614659 DAXXQ9UER7 740 aaPredicted RBP20.85■□□□□ 0.93
SNPH-203ENST00000614659 ZNF316A6NFI3 1004 aaPredicted RBP20.82■□□□□ 0.92
SNPH-203ENST00000614659 TRIM52Q96A61 297 aa20.77■□□□□ 0.92
SNPH-203ENST00000614659 POLR3GLQ9BT43 218 aa20.75■□□□□ 0.91
SNPH-203ENST00000614659 ESF1Q9H501 851 aaKnown RBP20.73■□□□□ 0.91
SNPH-203ENST00000614659 SLC4A1APQ9BWU0 796 aaKnown RBP20.68■□□□□ 0.9
SNPH-203ENST00000614659 EEA1Q15075 1411 aa20.68■□□□□ 0.9
SNPH-203ENST00000614659 RSF1Q96T23 1441 aaPredicted RBP20.67■□□□□ 0.9
SNPH-203ENST00000614659 CHMP7Q8WUX9 453 aaPredicted RBP20.64■□□□□ 0.89
SNPH-203ENST00000614659 BAZ1BQ9UIG0 1483 aaKnown RBP20.63■□□□□ 0.89
SNPH-203ENST00000614659 ANP32CO43423 234 aa20.62■□□□□ 0.89
SNPH-203ENST00000614659 RTL5Q5HYW3 569 aaPredicted RBP20.61■□□□□ 0.89
SNPH-203ENST00000614659 CLSPNQ9HAW4 1339 aa20.61■□□□□ 0.89
SNPH-203ENST00000614659 NEUROD1Q13562 356 aa20.59■□□□□ 0.89
SNPH-203ENST00000614659 ERCC6Q03468 1493 aa20.56■□□□□ 0.88
SNPH-203ENST00000614659 GTF3C3Q9Y5Q9 886 aa20.56■□□□□ 0.88
SNPH-203ENST00000614659 P3H3Q8IVL6 736 aa20.56■□□□□ 0.88
SNPH-203ENST00000614659 ACIN1Q9UKV3 1341 aaKnown RBP20.55■□□□□ 0.88
SNPH-203ENST00000614659 MYO15BQ96JP2 1530 aa20.52■□□□□ 0.88
SNPH-203ENST00000614659 BCANQ96GW7 911 aa20.52■□□□□ 0.88
SNPH-203ENST00000614659 ZNF777Q9ULD5 760 aaPredicted RBP20.48■□□□□ 0.87
SNPH-203ENST00000614659 GOLGA3Q08378 1498 aa20.46■□□□□ 0.87
SNPH-203ENST00000614659 BAZ1AQ9NRL2 1556 aaPredicted RBP20.44■□□□□ 0.86
SNPH-203ENST00000614659 ARID3CA6NKF2 412 aa20.44■□□□□ 0.86
SNPH-203ENST00000614659 CLIP1P30622 1438 aa20.39■□□□□ 0.85
SNPH-203ENST00000614659 STAG3Q9UJ98 1225 aa20.37■□□□□ 0.85
SNPH-203ENST00000614659 CEP162Q5TB80 1403 aa20.33■□□□□ 0.85
SNPH-203ENST00000614659 TNIKQ9UKE5 1360 aa20.33■□□□□ 0.84
SNPH-203ENST00000614659 WRNQ14191 1432 aaPredicted RBP eCLIP20.31■□□□□ 0.84
SNPH-203ENST00000614659 TONSLQ96HA7 1378 aa20.29■□□□□ 0.84
SNPH-203ENST00000614659 CNGB1Q14028 1251 aaPredicted RBP20.29■□□□□ 0.84
SNPH-203ENST00000614659 CEP164Q9UPV0 1460 aa20.29■□□□□ 0.84
SNPH-203ENST00000614659 ZNF326Q5BKZ1 582 aaKnown RBP20.28■□□□□ 0.84
SNPH-203ENST00000614659 NEFMP07197 916 aa20.25■□□□□ 0.83
SNPH-203ENST00000614659 TSPY4P0CV99 314 aa20.25■□□□□ 0.83
SNPH-203ENST00000614659 TSPY10P0CW01 314 aa20.25■□□□□ 0.83
SNPH-203ENST00000614659 SMARCA2P51531 1590 aa20.24■□□□□ 0.83
SNPH-203ENST00000614659 KIF27Q86VH2 1401 aa20.22■□□□□ 0.83
SNPH-203ENST00000614659 PDS5BQ9NTI5 1447 aa20.2■□□□□ 0.82
SNPH-203ENST00000614659 PLEKHD1A6NEE1 506 aa20.18■□□□□ 0.82
SNPH-203ENST00000614659 MTUS2Q5JR59 1369 aa20.18■□□□□ 0.82
SNPH-203ENST00000614659 CHGAP10645 457 aaKnown RBP20.13■□□□□ 0.81
SNPH-203ENST00000614659 CECR2Q9BXF3 1484 aa20.07■□□□□ 0.8
SNPH-203ENST00000614659 PLPPR3Q6T4P5 718 aa20.03■□□□□ 0.8
SNPH-203ENST00000614659 KCNH8Q96L42 1107 aa20■□□□□ 0.79
SNPH-203ENST00000614659 ZBTB47Q9UFB7 747 aaPredicted RBP19.99■□□□□ 0.79
SNPH-203ENST00000614659 MROH2BQ7Z745 1585 aa19.97■□□□□ 0.79
SNPH-203ENST00000614659 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.96■□□□□ 0.79
SNPH-203ENST00000614659 DDX10Q13206 875 aaKnown RBP19.96■□□□□ 0.79
SNPH-203ENST00000614659 ANP32AP39687 249 aaKnown RBP19.94■□□□□ 0.78
SNPH-203ENST00000614659 FKBP8Q14318 412 aa19.93■□□□□ 0.78
SNPH-203ENST00000614659 TOP2AP11388 1531 aaKnown RBP19.92■□□□□ 0.78
SNPH-203ENST00000614659 ARID4BQ4LE39 1312 aaPredicted RBP19.92■□□□□ 0.78
SNPH-203ENST00000614659 SLC24A1O60721 1099 aa19.91■□□□□ 0.78
SNPH-203ENST00000614659 CANXP27824 592 aaKnown RBP19.9■□□□□ 0.78
SNPH-203ENST00000614659 HNRNPUQ00839 825 aaKnown RBP eCLIP19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 132.1 ms