RNA–Protein interactions for RNA: ENST00000613870.4

PSMB3-208, Transcript of proteasome subunit beta 3, humanhuman

TSL 3

Gene PSMB3, Length 662 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMB3-208ENST00000613870 NISCHQ9Y2I1 1504 aa19.76■□□□□ 0.75
PSMB3-208ENST00000613870 CCDC180Q9P1Z9 1646 aa17.64■□□□□ 0.41
PSMB3-208ENST00000613870 ABCC9O60706 1549 aa17.47■□□□□ 0.39
PSMB3-208ENST00000613870 RB1CC1Q8TDY2 1594 aa16.7■□□□□ 0.26
PSMB3-208ENST00000613870 NACADO15069 1562 aa16.64■□□□□ 0.25
PSMB3-208ENST00000613870 DCAF8L2P0C7V8 631 aa16.61■□□□□ 0.25
PSMB3-208ENST00000613870 MYO15BQ96JP2 1530 aa16.47■□□□□ 0.23
PSMB3-208ENST00000613870 ZCCHC6Q5VYS8 1495 aaKnown RBP16.41■□□□□ 0.22
PSMB3-208ENST00000613870 UNC13AQ9UPW8 1703 aa16.38■□□□□ 0.21
PSMB3-208ENST00000613870 DCAF1Q9Y4B6 1507 aa16.33■□□□□ 0.2
PSMB3-208ENST00000613870 PABPN1Q86U42 306 aaKnown RBP eCLIP16.32■□□□□ 0.2
PSMB3-208ENST00000613870 DNAJC5BQ9UF47 199 aa16.28■□□□□ 0.2
PSMB3-208ENST00000613870 BICRAQ9NZM4 1560 aa16.25■□□□□ 0.19
PSMB3-208ENST00000613870 SCRIBQ14160 1630 aa16.09■□□□□ 0.17
PSMB3-208ENST00000613870 SHROOM4Q9ULL8 1493 aa15.99■□□□□ 0.15
PSMB3-208ENST00000613870 EIF4G1Q04637 1599 aaKnown RBP15.81■□□□□ 0.12
PSMB3-208ENST00000613870 CC2D2AQ9P2K1 1620 aa15.8■□□□□ 0.12
PSMB3-208ENST00000613870 CECR2Q9BXF3 1484 aa15.71■□□□□ 0.11
PSMB3-208ENST00000613870 SMARCA4P51532 1647 aa15.38■□□□□ 0.05
PSMB3-208ENST00000613870 NCAPD3P42695 1498 aa15.37■□□□□ 0.05
PSMB3-208ENST00000613870 ATAD2BQ9ULI0 1458 aa15.34■□□□□ 0.05
PSMB3-208ENST00000613870 BAZ1AQ9NRL2 1556 aaPredicted RBP15.32■□□□□ 0.04
PSMB3-208ENST00000613870 SMARCA2P51531 1590 aa15.29■□□□□ 0.04
PSMB3-208ENST00000613870 HMGXB3Q12766 1538 aa15.26■□□□□ 0.03
PSMB3-208ENST00000613870 MROH2BQ7Z745 1585 aa15.24■□□□□ 0.03
PSMB3-208ENST00000613870 PEG3Q9GZU2 1588 aa15.23■□□□□ 0.03
PSMB3-208ENST00000613870 BAZ1BQ9UIG0 1483 aaKnown RBP15.19■□□□□ 0.02
PSMB3-208ENST00000613870 NESP48681 1621 aa15.09■□□□□ 0.01
PSMB3-208ENST00000613870 WIZO95785 1651 aa15.08■□□□□ 0
PSMB3-208ENST00000613870 ERCC6Q03468 1493 aa15.05■□□□□ -0
PSMB3-208ENST00000613870 RSF1Q96T23 1441 aaPredicted RBP15□□□□□ -0.01
PSMB3-208ENST00000613870 LAMC3Q9Y6N6 1575 aa14.98□□□□□ -0.01
PSMB3-208ENST00000613870 CUX2O14529 1486 aa14.97□□□□□ -0.01
PSMB3-208ENST00000613870 SUPT5HO00267 1087 aaKnown RBP14.97□□□□□ -0.01
PSMB3-208ENST00000613870 CADPSQ9ULU8 1353 aa14.91□□□□□ -0.02
PSMB3-208ENST00000613870 KIF21AQ7Z4S6 1674 aa14.9□□□□□ -0.02
PSMB3-208ENST00000613870 PDS5BQ9NTI5 1447 aa14.88□□□□□ -0.03
PSMB3-208ENST00000613870 THOC2Q8NI27 1593 aaKnown RBP14.88□□□□□ -0.03
PSMB3-208ENST00000613870 TOP2AP11388 1531 aaKnown RBP14.87□□□□□ -0.03
PSMB3-208ENST00000613870 DNAJC5Q9H3Z4 198 aa14.79□□□□□ -0.04
PSMB3-208ENST00000613870 CFTRP13569 1480 aa14.78□□□□□ -0.04
PSMB3-208ENST00000613870 MRC2Q9UBG0 1479 aa14.74□□□□□ -0.05
PSMB3-208ENST00000613870 FANCD2Q9BXW9 1451 aa14.73□□□□□ -0.05
PSMB3-208ENST00000613870 CCDC88BA6NC98 1476 aa14.72□□□□□ -0.05
PSMB3-208ENST00000613870 CEP164Q9UPV0 1460 aa14.71□□□□□ -0.05
PSMB3-208ENST00000613870 WDR62O43379 1518 aa14.71□□□□□ -0.06
PSMB3-208ENST00000613870 PRDM2Q13029 1718 aa14.65□□□□□ -0.06
PSMB3-208ENST00000613870 URB2Q14146 1524 aaKnown RBP14.61□□□□□ -0.07
PSMB3-208ENST00000613870 TOPBP1Q92547 1522 aa14.47□□□□□ -0.09
PSMB3-208ENST00000613870 ABCC8Q09428 1581 aa14.44□□□□□ -0.1
PSMB3-208ENST00000613870 DNMBPQ6XZF7 1577 aa14.43□□□□□ -0.1
PSMB3-208ENST00000613870 IFT140Q96RY7 1462 aa14.42□□□□□ -0.1
PSMB3-208ENST00000613870 ZNF608Q9ULD9 1512 aaPredicted RBP14.41□□□□□ -0.1
PSMB3-208ENST00000613870 TARBP1Q13395 1621 aaKnown RBP14.35□□□□□ -0.11
PSMB3-208ENST00000613870 POLA1P09884 1462 aaPredicted RBP14.35□□□□□ -0.11
PSMB3-208ENST00000613870 OSCARQ8IYS5 282 aa14.34□□□□□ -0.11
PSMB3-208ENST00000613870 EIF4G3O43432 1585 aaKnown RBP14.32□□□□□ -0.12
PSMB3-208ENST00000613870 AQRO60306 1485 aaKnown RBP eCLIP14.3□□□□□ -0.126e-12■■■■■ 50.2
PSMB3-208ENST00000613870 RAD54L2Q9Y4B4 1467 aa14.3□□□□□ -0.12
PSMB3-208ENST00000613870 CUX1P39880 1505 aa14.3□□□□□ -0.12
PSMB3-208ENST00000613870 SOGA1O94964 1423 aa14.28□□□□□ -0.12
PSMB3-208ENST00000613870 FGD5Q6ZNL6 1462 aa14.27□□□□□ -0.12
PSMB3-208ENST00000613870 TDRD9Q8NDG6 1382 aaKnown RBP14.23□□□□□ -0.13
PSMB3-208ENST00000613870 TRIM41Q8WV44 630 aa14.2□□□□□ -0.14
PSMB3-208ENST00000613870 CHD1O14646 1710 aa14.2□□□□□ -0.14
PSMB3-208ENST00000613870 WDR97A6NE52 1622 aa14.18□□□□□ -0.14
PSMB3-208ENST00000613870 FBLN2P98095 1184 aa14.15□□□□□ -0.14
PSMB3-208ENST00000613870 RIMBP3CA6NJZ7 1639 aa14.14□□□□□ -0.15
PSMB3-208ENST00000613870 RIMBP3BA6NNM3 1639 aa14.14□□□□□ -0.15
PSMB3-208ENST00000613870 RIMBP3Q9UFD9 1639 aa14.14□□□□□ -0.15
PSMB3-208ENST00000613870 SNAPC4Q5SXM2 1469 aa14.13□□□□□ -0.15
PSMB3-208ENST00000613870 CHIC1Q5VXU3 224 aa14.13□□□□□ -0.15
PSMB3-208ENST00000613870 GRIN2BQ13224 1484 aa14.12□□□□□ -0.15
PSMB3-208ENST00000613870 TOP2BQ02880 1626 aa14.12□□□□□ -0.15
PSMB3-208ENST00000613870 BIVM-ERCC5R4GMW8 1640 aa14.12□□□□□ -0.15
PSMB3-208ENST00000613870 ABCA10Q8WWZ4 1543 aa14.12□□□□□ -0.15
PSMB3-208ENST00000613870 WRNQ14191 1432 aaPredicted RBP eCLIP14.12□□□□□ -0.15
PSMB3-208ENST00000613870 SYNJ1O43426 1573 aa14.12□□□□□ -0.15
PSMB3-208ENST00000613870 ARHGEF11O15085 1522 aa14.1□□□□□ -0.15
PSMB3-208ENST00000613870 GAPVD1Q14C86 1478 aa14.1□□□□□ -0.15
PSMB3-208ENST00000613870 MAGI1Q96QZ7 1491 aaPredicted RBP14.1□□□□□ -0.15
PSMB3-208ENST00000613870 PBRM1Q86U86 1689 aa14.1□□□□□ -0.15
PSMB3-208ENST00000613870 ABCA5Q8WWZ7 1642 aa14.08□□□□□ -0.15
PSMB3-208ENST00000613870 CHMP7Q8WUX9 453 aaPredicted RBP14.08□□□□□ -0.16
PSMB3-208ENST00000613870 SYNJ2O15056 1496 aa14.06□□□□□ -0.16
PSMB3-208ENST00000613870 CLASP1Q7Z460 1538 aa14.03□□□□□ -0.16
PSMB3-208ENST00000613870 CYB5RLQ6IPT4 315 aa14□□□□□ -0.17
PSMB3-208ENST00000613870 ARAP1Q96P48 1450 aa13.98□□□□□ -0.17
PSMB3-208ENST00000613870 ADAMTS12P58397 1594 aa13.96□□□□□ -0.18
PSMB3-208ENST00000613870 ERICH3Q5RHP9 1530 aa13.95□□□□□ -0.18
PSMB3-208ENST00000613870 GRIN2AQ12879 1464 aa13.94□□□□□ -0.18
PSMB3-208ENST00000613870 FHAD1B1AJZ9 1412 aa13.93□□□□□ -0.18
PSMB3-208ENST00000613870 CEP170Q5SW79 1584 aa13.9□□□□□ -0.18
PSMB3-208ENST00000613870 NUP160Q12769 1436 aa13.9□□□□□ -0.19
PSMB3-208ENST00000613870 FAM9AQ8IZU1 332 aaPredicted RBP13.85□□□□□ -0.19
PSMB3-208ENST00000613870 ERCC6L2Q5T890 1561 aa13.84□□□□□ -0.19
PSMB3-208ENST00000613870 IGF1RP08069 1367 aa13.83□□□□□ -0.19
PSMB3-208ENST00000613870 SHROOM2Q13796 1616 aa13.82□□□□□ -0.2
PSMB3-208ENST00000613870 KIF27Q86VH2 1401 aa13.82□□□□□ -0.2
PSMB3-208ENST00000613870 CUL7Q14999 1698 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms