RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 NISCHQ9Y2I1 1504 aa27.13■■□□□ 1.93
SLIRP-212ENST00000613856 ABCC9O60706 1549 aa25.02■■□□□ 1.6
SLIRP-212ENST00000613856 CCDC180Q9P1Z9 1646 aa24.51■■□□□ 1.51
SLIRP-212ENST00000613856 DNAJC5BQ9UF47 199 aa23.91■■□□□ 1.42
SLIRP-212ENST00000613856 RB1CC1Q8TDY2 1594 aa23.51■■□□□ 1.35
SLIRP-212ENST00000613856 NACADO15069 1562 aa23.23■■□□□ 1.31
SLIRP-212ENST00000613856 PABPN1Q86U42 306 aaKnown RBP eCLIP23.23■■□□□ 1.31
SLIRP-212ENST00000613856 UNC13AQ9UPW8 1703 aa23.19■■□□□ 1.3
SLIRP-212ENST00000613856 DCAF8L2P0C7V8 631 aa23.08■■□□□ 1.29
SLIRP-212ENST00000613856 BICRAQ9NZM4 1560 aa22.98■■□□□ 1.27
SLIRP-212ENST00000613856 MYO15BQ96JP2 1530 aa22.71■■□□□ 1.23
SLIRP-212ENST00000613856 CC2D2AQ9P2K1 1620 aa22.57■■□□□ 1.2
SLIRP-212ENST00000613856 CECR2Q9BXF3 1484 aa22.52■■□□□ 1.2
SLIRP-212ENST00000613856 SCRIBQ14160 1630 aa22.42■■□□□ 1.18
SLIRP-212ENST00000613856 ZCCHC6Q5VYS8 1495 aaKnown RBP22.41■■□□□ 1.18
SLIRP-212ENST00000613856 EIF4G1Q04637 1599 aaKnown RBP22.39■■□□□ 1.18
SLIRP-212ENST00000613856 SHROOM4Q9ULL8 1493 aa22.38■■□□□ 1.17
SLIRP-212ENST00000613856 DCAF1Q9Y4B6 1507 aa22.3■■□□□ 1.16
SLIRP-212ENST00000613856 DNAJC5Q9H3Z4 198 aa22.09■■□□□ 1.13
SLIRP-212ENST00000613856 CUX2O14529 1486 aa21.6■■□□□ 1.05
SLIRP-212ENST00000613856 ERCC6Q03468 1493 aa21.53■■□□□ 1.04
SLIRP-212ENST00000613856 NCAPD3P42695 1498 aa21.45■■□□□ 1.03
SLIRP-212ENST00000613856 NESP48681 1621 aa21.42■■□□□ 1.02
SLIRP-212ENST00000613856 ATAD2BQ9ULI0 1458 aa21.39■■□□□ 1.01
SLIRP-212ENST00000613856 SMARCA4P51532 1647 aa21.29■■□□□ 1
SLIRP-212ENST00000613856 HMGXB3Q12766 1538 aa21.28■■□□□ 1
SLIRP-212ENST00000613856 THOC2Q8NI27 1593 aaKnown RBP21.26■□□□□ 0.99
SLIRP-212ENST00000613856 SMARCA2P51531 1590 aa21.24■□□□□ 0.99
SLIRP-212ENST00000613856 KIF21AQ7Z4S6 1674 aa21.14■□□□□ 0.97
SLIRP-212ENST00000613856 BAZ1BQ9UIG0 1483 aaKnown RBP21.13■□□□□ 0.97
SLIRP-212ENST00000613856 LAMC3Q9Y6N6 1575 aa21.06■□□□□ 0.96
SLIRP-212ENST00000613856 BAZ1AQ9NRL2 1556 aaPredicted RBP21.05■□□□□ 0.96
SLIRP-212ENST00000613856 PEG3Q9GZU2 1588 aa21.03■□□□□ 0.96
SLIRP-212ENST00000613856 TRIM41Q8WV44 630 aa21.02■□□□□ 0.96
SLIRP-212ENST00000613856 MROH2BQ7Z745 1585 aa20.98■□□□□ 0.95
SLIRP-212ENST00000613856 PDS5BQ9NTI5 1447 aa20.88■□□□□ 0.93
SLIRP-212ENST00000613856 MRC2Q9UBG0 1479 aa20.81■□□□□ 0.92
SLIRP-212ENST00000613856 WDR62O43379 1518 aa20.8■□□□□ 0.92
SLIRP-212ENST00000613856 CADPSQ9ULU8 1353 aa20.78■□□□□ 0.92
SLIRP-212ENST00000613856 WIZO95785 1651 aa20.74■□□□□ 0.91
SLIRP-212ENST00000613856 CEP164Q9UPV0 1460 aa20.63■□□□□ 0.89
SLIRP-212ENST00000613856 FANCD2Q9BXW9 1451 aa20.6■□□□□ 0.89
SLIRP-212ENST00000613856 URB2Q14146 1524 aaKnown RBP20.53■□□□□ 0.88
SLIRP-212ENST00000613856 RSF1Q96T23 1441 aaPredicted RBP20.53■□□□□ 0.88
SLIRP-212ENST00000613856 OSCARQ8IYS5 282 aa20.51■□□□□ 0.87
SLIRP-212ENST00000613856 CFTRP13569 1480 aa20.49■□□□□ 0.87
SLIRP-212ENST00000613856 RIMBP3CA6NJZ7 1639 aa20.46■□□□□ 0.87
SLIRP-212ENST00000613856 RIMBP3BA6NNM3 1639 aa20.46■□□□□ 0.87
SLIRP-212ENST00000613856 RIMBP3Q9UFD9 1639 aa20.46■□□□□ 0.87
SLIRP-212ENST00000613856 ZNF608Q9ULD9 1512 aaPredicted RBP20.36■□□□□ 0.85
SLIRP-212ENST00000613856 TOP2AP11388 1531 aaKnown RBP20.35■□□□□ 0.85
SLIRP-212ENST00000613856 SUPT5HO00267 1087 aaKnown RBP20.34■□□□□ 0.85
SLIRP-212ENST00000613856 PRDM2Q13029 1718 aa20.32■□□□□ 0.84
SLIRP-212ENST00000613856 ARHGEF11O15085 1522 aa20.31■□□□□ 0.84
SLIRP-212ENST00000613856 IFT140Q96RY7 1462 aa20.21■□□□□ 0.83
SLIRP-212ENST00000613856 EIF4G3O43432 1585 aaKnown RBP20.21■□□□□ 0.83
SLIRP-212ENST00000613856 TOPBP1Q92547 1522 aa20.18■□□□□ 0.82
SLIRP-212ENST00000613856 CHD1O14646 1710 aa20.18■□□□□ 0.82
SLIRP-212ENST00000613856 CYB5RLQ6IPT4 315 aa20.15■□□□□ 0.82
SLIRP-212ENST00000613856 CCDC88BA6NC98 1476 aa20.14■□□□□ 0.81
SLIRP-212ENST00000613856 ARAP1Q96P48 1450 aa20.11■□□□□ 0.81
SLIRP-212ENST00000613856 AQRO60306 1485 aaKnown RBP eCLIP20.08■□□□□ 0.812e-9■□□□□ 10.8
SLIRP-212ENST00000613856 TARBP1Q13395 1621 aaKnown RBP20.07■□□□□ 0.8
SLIRP-212ENST00000613856 DNMBPQ6XZF7 1577 aa20.05■□□□□ 0.8
SLIRP-212ENST00000613856 TRHP20396 242 aaPredicted RBP20.03■□□□□ 0.8
SLIRP-212ENST00000613856 FBLN2P98095 1184 aa19.97■□□□□ 0.79
SLIRP-212ENST00000613856 ABCC8Q09428 1581 aa19.95■□□□□ 0.78
SLIRP-212ENST00000613856 POLA1P09884 1462 aaPredicted RBP19.95■□□□□ 0.78
SLIRP-212ENST00000613856 RAD54L2Q9Y4B4 1467 aa19.94■□□□□ 0.78
SLIRP-212ENST00000613856 TDRD9Q8NDG6 1382 aaKnown RBP19.88■□□□□ 0.77
SLIRP-212ENST00000613856 CLASP1Q7Z460 1538 aa19.87■□□□□ 0.77
SLIRP-212ENST00000613856 SNAPC4Q5SXM2 1469 aa19.86■□□□□ 0.77
SLIRP-212ENST00000613856 SOGA1O94964 1423 aa19.8■□□□□ 0.76
SLIRP-212ENST00000613856 FGD5Q6ZNL6 1462 aa19.78■□□□□ 0.76
SLIRP-212ENST00000613856 SYNJ1O43426 1573 aa19.74■□□□□ 0.75
SLIRP-212ENST00000613856 CUX1P39880 1505 aa19.72■□□□□ 0.75
SLIRP-212ENST00000613856 WDR97A6NE52 1622 aa19.71■□□□□ 0.75
SLIRP-212ENST00000613856 CHMP7Q8WUX9 453 aaPredicted RBP19.7■□□□□ 0.74
SLIRP-212ENST00000613856 MAGI1Q96QZ7 1491 aaPredicted RBP19.7■□□□□ 0.74
SLIRP-212ENST00000613856 AEBP2Q6ZN18 517 aaPredicted RBP19.69■□□□□ 0.74
SLIRP-212ENST00000613856 PBRM1Q86U86 1689 aa19.68■□□□□ 0.74
SLIRP-212ENST00000613856 SYNJ2O15056 1496 aa19.66■□□□□ 0.74
SLIRP-212ENST00000613856 GRIN2BQ13224 1484 aa19.66■□□□□ 0.74
SLIRP-212ENST00000613856 GAPVD1Q14C86 1478 aa19.65■□□□□ 0.74
SLIRP-212ENST00000613856 ERCC6L2Q5T890 1561 aa19.64■□□□□ 0.73
SLIRP-212ENST00000613856 ABCA5Q8WWZ7 1642 aa19.56■□□□□ 0.72
SLIRP-212ENST00000613856 CEP170Q5SW79 1584 aa19.49■□□□□ 0.71
SLIRP-212ENST00000613856 ABCA10Q8WWZ4 1543 aa19.48■□□□□ 0.71
SLIRP-212ENST00000613856 GRIN2AQ12879 1464 aa19.46■□□□□ 0.71
SLIRP-212ENST00000613856 KIF13AQ9H1H9 1805 aa19.46■□□□□ 0.71
SLIRP-212ENST00000613856 ADAMTS12P58397 1594 aa19.44■□□□□ 0.7
SLIRP-212ENST00000613856 SHROOM2Q13796 1616 aa19.4■□□□□ 0.7
SLIRP-212ENST00000613856 CHIC1Q5VXU3 224 aa19.4■□□□□ 0.7
SLIRP-212ENST00000613856 NUP160Q12769 1436 aa19.4■□□□□ 0.7
SLIRP-212ENST00000613856 WRNQ14191 1432 aaPredicted RBP eCLIP19.34■□□□□ 0.69
SLIRP-212ENST00000613856 BIVM-ERCC5R4GMW8 1640 aa19.32■□□□□ 0.68
SLIRP-212ENST00000613856 TOP2BQ02880 1626 aa19.29■□□□□ 0.68
SLIRP-212ENST00000613856 FHAD1B1AJZ9 1412 aa19.26■□□□□ 0.67
SLIRP-212ENST00000613856 PRG4Q92954 1404 aaPredicted RBP19.25■□□□□ 0.67
SLIRP-212ENST00000613856 ERICH3Q5RHP9 1530 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms