RNA–Protein interactions for RNA: ENST00000611575.4

CLK4-214, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best) BASIC

Gene CLK4, Length 1,206 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-214ENST00000611575 AEBP2Q6ZN18 517 aaPredicted RBP22.4■■□□□ 1.18
CLK4-214ENST00000611575 CHIC1Q5VXU3 224 aa21.27■■□□□ 1
CLK4-214ENST00000611575 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
CLK4-214ENST00000611575 PHF23Q9BUL5 403 aaPredicted RBP18.81■□□□□ 0.6
CLK4-214ENST00000611575 NISCHQ9Y2I1 1504 aa18.34■□□□□ 0.53
CLK4-214ENST00000611575 FOXD1Q16676 465 aa17.77■□□□□ 0.44
CLK4-214ENST00000611575 PLPPR3Q6T4P5 718 aa16.99■□□□□ 0.31
CLK4-214ENST00000611575 PPP6R1Q9UPN7 881 aa16.71■□□□□ 0.27
CLK4-214ENST00000611575 ADRA2BP18089 450 aa16.66■□□□□ 0.26
CLK4-214ENST00000611575 ABCC9O60706 1549 aa16.65■□□□□ 0.26
CLK4-214ENST00000611575 PIAS4Q8N2W9 510 aaPredicted RBP16.58■□□□□ 0.24
CLK4-214ENST00000611575 CCDC180Q9P1Z9 1646 aa16.53■□□□□ 0.24
CLK4-214ENST00000611575 MSH5O43196 834 aa16.5■□□□□ 0.23
CLK4-214ENST00000611575 POTEDQ86YR6 584 aa16.07■□□□□ 0.16
CLK4-214ENST00000611575 DNAJC5BQ9UF47 199 aa15.89■□□□□ 0.13
CLK4-214ENST00000611575 RB1CC1Q8TDY2 1594 aa15.79■□□□□ 0.12
CLK4-214ENST00000611575 NACADO15069 1562 aa15.69■□□□□ 0.1
CLK4-214ENST00000611575 MYO15BQ96JP2 1530 aa15.53■□□□□ 0.08
CLK4-214ENST00000611575 PABPN1Q86U42 306 aaKnown RBP eCLIP15.44■□□□□ 0.06
CLK4-214ENST00000611575 BICRAQ9NZM4 1560 aa15.44■□□□□ 0.06
CLK4-214ENST00000611575 UNC13AQ9UPW8 1703 aa15.4■□□□□ 0.06
CLK4-214ENST00000611575 MAPK8IP2Q13387 824 aaPredicted RBP15.3■□□□□ 0.04
CLK4-214ENST00000611575 DCAF8L2P0C7V8 631 aa15.29■□□□□ 0.04
CLK4-214ENST00000611575 SHROOM4Q9ULL8 1493 aa15.27■□□□□ 0.03
CLK4-214ENST00000611575 DCAF1Q9Y4B6 1507 aa15.23■□□□□ 0.03
CLK4-214ENST00000611575 ZCCHC6Q5VYS8 1495 aaKnown RBP15.2■□□□□ 0.02
CLK4-214ENST00000611575 SCAF1Q9H7N4 1312 aaKnown RBP15.1■□□□□ 0.01
CLK4-214ENST00000611575 DMRT2Q9Y5R5 561 aa15.09■□□□□ 0.01
CLK4-214ENST00000611575 CC2D2AQ9P2K1 1620 aa15.06■□□□□ 0
CLK4-214ENST00000611575 CECR2Q9BXF3 1484 aa15.06■□□□□ 0
CLK4-214ENST00000611575 EIF4G1Q04637 1599 aaKnown RBP15.02■□□□□ -0
CLK4-214ENST00000611575 SCRIBQ14160 1630 aa14.95□□□□□ -0.02
CLK4-214ENST00000611575 PPP4R3CPQ6ZMV5 832 aa14.95□□□□□ -0.02
CLK4-214ENST00000611575 KCNA4P22459 653 aa14.84□□□□□ -0.03
CLK4-214ENST00000611575 DNAJC5Q9H3Z4 198 aa14.73□□□□□ -0.05
CLK4-214ENST00000611575 CNKSR2Q8WXI2 1034 aa14.6□□□□□ -0.07
CLK4-214ENST00000611575 HOXD11P31277 338 aaPredicted RBP14.56□□□□□ -0.08
CLK4-214ENST00000611575 NCAPD3P42695 1498 aa14.54□□□□□ -0.08
CLK4-214ENST00000611575 CUX2O14529 1486 aa14.52□□□□□ -0.08
CLK4-214ENST00000611575 DCAF8L1A6NGE4 600 aa14.5□□□□□ -0.09
CLK4-214ENST00000611575 RNF216Q9NWF9 866 aaPredicted RBP14.46□□□□□ -0.09
CLK4-214ENST00000611575 ATAD2BQ9ULI0 1458 aa14.43□□□□□ -0.1
CLK4-214ENST00000611575 NCBP3Q53F19 620 aaKnown RBP14.39□□□□□ -0.11
CLK4-214ENST00000611575 HMGXB3Q12766 1538 aa14.39□□□□□ -0.11
CLK4-214ENST00000611575 ERCC6Q03468 1493 aa14.34□□□□□ -0.11
CLK4-214ENST00000611575 SMARCA2P51531 1590 aa14.34□□□□□ -0.11
CLK4-214ENST00000611575 SMARCA4P51532 1647 aa14.32□□□□□ -0.12
CLK4-214ENST00000611575 PEG3Q9GZU2 1588 aa14.29□□□□□ -0.12
CLK4-214ENST00000611575 NESP48681 1621 aa14.28□□□□□ -0.12
CLK4-214ENST00000611575 NPM3O75607 178 aaKnown RBP14.24□□□□□ -0.13
CLK4-214ENST00000611575 EHMT2Q96KQ7 1210 aa14.23□□□□□ -0.13
CLK4-214ENST00000611575 THOC2Q8NI27 1593 aaKnown RBP14.22□□□□□ -0.13
CLK4-214ENST00000611575 BAZ1AQ9NRL2 1556 aaPredicted RBP14.22□□□□□ -0.13
CLK4-214ENST00000611575 BAZ1BQ9UIG0 1483 aaKnown RBP14.2□□□□□ -0.14
CLK4-214ENST00000611575 SLC4A1APQ9BWU0 796 aaKnown RBP14.18□□□□□ -0.14
CLK4-214ENST00000611575 LAMC3Q9Y6N6 1575 aa14.17□□□□□ -0.14
CLK4-214ENST00000611575 CACNB1Q02641 598 aaPredicted RBP14.17□□□□□ -0.14
CLK4-214ENST00000611575 RNF39Q9H2S5 420 aa14.14□□□□□ -0.15
CLK4-214ENST00000611575 MROH2BQ7Z745 1585 aa14.11□□□□□ -0.15
CLK4-214ENST00000611575 PDS5BQ9NTI5 1447 aa14.07□□□□□ -0.16
CLK4-214ENST00000611575 CADPSQ9ULU8 1353 aa14.04□□□□□ -0.16
CLK4-214ENST00000611575 KIF21AQ7Z4S6 1674 aa14.04□□□□□ -0.16
CLK4-214ENST00000611575 WDR62O43379 1518 aa14□□□□□ -0.17
CLK4-214ENST00000611575 MRC2Q9UBG0 1479 aa13.98□□□□□ -0.17
CLK4-214ENST00000611575 CSRNP3Q8WYN3 585 aa13.96□□□□□ -0.17
CLK4-214ENST00000611575 C1QBPQ07021 282 aaKnown RBP13.89□□□□□ -0.19
CLK4-214ENST00000611575 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.89□□□□□ -0.193e-8■■■■□ 20.2
CLK4-214ENST00000611575 CFTRP13569 1480 aa13.87□□□□□ -0.19
CLK4-214ENST00000611575 WIZO95785 1651 aa13.86□□□□□ -0.19
CLK4-214ENST00000611575 CEP164Q9UPV0 1460 aa13.86□□□□□ -0.19
CLK4-214ENST00000611575 FANCD2Q9BXW9 1451 aa13.84□□□□□ -0.19
CLK4-214ENST00000611575 TRIM41Q8WV44 630 aa13.8□□□□□ -0.2
CLK4-214ENST00000611575 URB2Q14146 1524 aaKnown RBP13.78□□□□□ -0.2
CLK4-214ENST00000611575 RSF1Q96T23 1441 aaPredicted RBP13.77□□□□□ -0.21
CLK4-214ENST00000611575 TOP2AP11388 1531 aaKnown RBP13.74□□□□□ -0.21
CLK4-214ENST00000611575 OSCARQ8IYS5 282 aa13.73□□□□□ -0.21
CLK4-214ENST00000611575 ZBTB22O15209 634 aa13.7□□□□□ -0.22
CLK4-214ENST00000611575 U3KPZ7 1027 aaPredicted RBP13.63□□□□□ -0.23
CLK4-214ENST00000611575 IFT140Q96RY7 1462 aa13.62□□□□□ -0.23
CLK4-214ENST00000611575 ZNF608Q9ULD9 1512 aaPredicted RBP13.62□□□□□ -0.23
CLK4-214ENST00000611575 RIMBP3CA6NJZ7 1639 aa13.6□□□□□ -0.23
CLK4-214ENST00000611575 RIMBP3BA6NNM3 1639 aa13.6□□□□□ -0.23
CLK4-214ENST00000611575 RIMBP3Q9UFD9 1639 aa13.6□□□□□ -0.23
CLK4-214ENST00000611575 CCDC88BA6NC98 1476 aa13.58□□□□□ -0.24
CLK4-214ENST00000611575 PRDM2Q13029 1718 aa13.58□□□□□ -0.24
CLK4-214ENST00000611575 SLC4A2P04920 1241 aa13.57□□□□□ -0.24
CLK4-214ENST00000611575 ARHGEF11O15085 1522 aa13.57□□□□□ -0.24
CLK4-214ENST00000611575 TOPBP1Q92547 1522 aa13.57□□□□□ -0.24
CLK4-214ENST00000611575 FOXD4L1Q9NU39 408 aa13.53□□□□□ -0.24
CLK4-214ENST00000611575 ABCC8Q09428 1581 aa13.53□□□□□ -0.24
CLK4-214ENST00000611575 EIF4G3O43432 1585 aaKnown RBP13.51□□□□□ -0.25
CLK4-214ENST00000611575 DNMBPQ6XZF7 1577 aa13.49□□□□□ -0.25
CLK4-214ENST00000611575 TARBP1Q13395 1621 aaKnown RBP13.49□□□□□ -0.25
CLK4-214ENST00000611575 ARAP1Q96P48 1450 aa13.44□□□□□ -0.26
CLK4-214ENST00000611575 SPINK5Q9NQ38 1064 aaPredicted RBP13.44□□□□□ -0.26
CLK4-214ENST00000611575 AQRO60306 1485 aaKnown RBP eCLIP13.43□□□□□ -0.261e-8■■■□□ 18.8
CLK4-214ENST00000611575 POLA1P09884 1462 aaPredicted RBP13.43□□□□□ -0.26
CLK4-214ENST00000611575 CYB5RLQ6IPT4 315 aa13.38□□□□□ -0.27
CLK4-214ENST00000611575 CHD1O14646 1710 aa13.37□□□□□ -0.27
CLK4-214ENST00000611575 CAPN15O75808 1086 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms