RNA–Protein interactions for RNA: ENST00000603907.1

GRAMD1A-214, Transcript of GRAM domain containing 1A, humanhuman

TSL 2

Gene GRAMD1A, Length 450 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRAMD1A-214ENST00000603907 NISCHQ9Y2I1 1504 aa49.69■■■■■ 5.54
GRAMD1A-214ENST00000603907 ABCC9O60706 1549 aa45.1■■■■■ 4.81
GRAMD1A-214ENST00000603907 CCDC180Q9P1Z9 1646 aa44.76■■■■■ 4.76
GRAMD1A-214ENST00000603907 RB1CC1Q8TDY2 1594 aa42.81■■■■■ 4.44
GRAMD1A-214ENST00000603907 DNAJC5BQ9UF47 199 aa42.58■■■■■ 4.41
GRAMD1A-214ENST00000603907 NACADO15069 1562 aa42.4■■■■■ 4.38
GRAMD1A-214ENST00000603907 DCAF8L2P0C7V8 631 aa42.05■■■■■ 4.32
GRAMD1A-214ENST00000603907 PABPN1Q86U42 306 aaKnown RBP eCLIP41.88■■■■■ 4.291e-9■■□□□ 13.3
GRAMD1A-214ENST00000603907 UNC13AQ9UPW8 1703 aa41.82■■■■■ 4.29
GRAMD1A-214ENST00000603907 MYO15BQ96JP2 1530 aa41.67■■■■■ 4.26
GRAMD1A-214ENST00000603907 BICRAQ9NZM4 1560 aa41.5■■■■■ 4.23
GRAMD1A-214ENST00000603907 ZCCHC6Q5VYS8 1495 aaKnown RBP41.49■■■■■ 4.23
GRAMD1A-214ENST00000603907 DCAF1Q9Y4B6 1507 aa41.22■■■■■ 4.19
GRAMD1A-214ENST00000603907 SHROOM4Q9ULL8 1493 aa40.99■■■■■ 4.15
GRAMD1A-214ENST00000603907 CC2D2AQ9P2K1 1620 aa40.74■■■■■ 4.11
GRAMD1A-214ENST00000603907 SCRIBQ14160 1630 aa40.71■■■■■ 4.11
GRAMD1A-214ENST00000603907 CECR2Q9BXF3 1484 aa40.69■■■■■ 4.1
GRAMD1A-214ENST00000603907 EIF4G1Q04637 1599 aaKnown RBP40.55■■■■■ 4.08
GRAMD1A-214ENST00000603907 DNAJC5Q9H3Z4 198 aa39.49■■■■□ 3.91
GRAMD1A-214ENST00000603907 NCAPD3P42695 1498 aa39.11■■■■□ 3.85
GRAMD1A-214ENST00000603907 CUX2O14529 1486 aa39.1■■■■□ 3.85
GRAMD1A-214ENST00000603907 ERCC6Q03468 1493 aa39.03■■■■□ 3.84
GRAMD1A-214ENST00000603907 ATAD2BQ9ULI0 1458 aa38.92■■■■□ 3.82
GRAMD1A-214ENST00000603907 SMARCA2P51531 1590 aa38.85■■■■□ 3.81
GRAMD1A-214ENST00000603907 HMGXB3Q12766 1538 aa38.81■■■■□ 3.8
GRAMD1A-214ENST00000603907 SMARCA4P51532 1647 aa38.81■■■■□ 3.8
GRAMD1A-214ENST00000603907 NESP48681 1621 aa38.6■■■■□ 3.77
GRAMD1A-214ENST00000603907 BAZ1AQ9NRL2 1556 aaPredicted RBP38.57■■■■□ 3.77
GRAMD1A-214ENST00000603907 BAZ1BQ9UIG0 1483 aaKnown RBP38.56■■■■□ 3.76
GRAMD1A-214ENST00000603907 PEG3Q9GZU2 1588 aa38.43■■■■□ 3.74
GRAMD1A-214ENST00000603907 LAMC3Q9Y6N6 1575 aa38.35■■■■□ 3.73
GRAMD1A-214ENST00000603907 THOC2Q8NI27 1593 aaKnown RBP38.34■■■■□ 3.73
GRAMD1A-214ENST00000603907 MROH2BQ7Z745 1585 aa38.25■■■■□ 3.71
GRAMD1A-214ENST00000603907 KIF21AQ7Z4S6 1674 aa38.15■■■■□ 3.7
GRAMD1A-214ENST00000603907 PDS5BQ9NTI5 1447 aa38.12■■■■□ 3.69
GRAMD1A-214ENST00000603907 RSF1Q96T23 1441 aaPredicted RBP38.01■■■■□ 3.68
GRAMD1A-214ENST00000603907 CADPSQ9ULU8 1353 aa37.9■■■■□ 3.66
GRAMD1A-214ENST00000603907 WIZO95785 1651 aa37.83■■■■□ 3.65
GRAMD1A-214ENST00000603907 MRC2Q9UBG0 1479 aa37.81■■■■□ 3.64
GRAMD1A-214ENST00000603907 WDR62O43379 1518 aa37.72■■■■□ 3.63
GRAMD1A-214ENST00000603907 TRIM41Q8WV44 630 aa37.61■■■■□ 3.61
GRAMD1A-214ENST00000603907 CEP164Q9UPV0 1460 aa37.59■■■■□ 3.61
GRAMD1A-214ENST00000603907 TOP2AP11388 1531 aaKnown RBP37.54■■■■□ 3.6
GRAMD1A-214ENST00000603907 FANCD2Q9BXW9 1451 aa37.48■■■■□ 3.59
GRAMD1A-214ENST00000603907 CFTRP13569 1480 aa37.38■■■■□ 3.57
GRAMD1A-214ENST00000603907 SUPT5HO00267 1087 aaKnown RBP37.32■■■■□ 3.56
GRAMD1A-214ENST00000603907 OSCARQ8IYS5 282 aa37.22■■■■□ 3.55
GRAMD1A-214ENST00000603907 URB2Q14146 1524 aaKnown RBP37.17■■■■□ 3.54
GRAMD1A-214ENST00000603907 CCDC88BA6NC98 1476 aa37.07■■■■□ 3.52
GRAMD1A-214ENST00000603907 PRDM2Q13029 1718 aa37.06■■■■□ 3.52
GRAMD1A-214ENST00000603907 IFT140Q96RY7 1462 aa36.85■■■■□ 3.49
GRAMD1A-214ENST00000603907 RIMBP3CA6NJZ7 1639 aa36.78■■■■□ 3.48
GRAMD1A-214ENST00000603907 RIMBP3BA6NNM3 1639 aa36.78■■■■□ 3.48
GRAMD1A-214ENST00000603907 RIMBP3Q9UFD9 1639 aa36.78■■■■□ 3.48
GRAMD1A-214ENST00000603907 ZNF608Q9ULD9 1512 aaPredicted RBP36.77■■■■□ 3.48
GRAMD1A-214ENST00000603907 TOPBP1Q92547 1522 aa36.72■■■■□ 3.47
GRAMD1A-214ENST00000603907 ABCC8Q09428 1581 aa36.67■■■■□ 3.46
GRAMD1A-214ENST00000603907 ARHGEF11O15085 1522 aa36.61■■■■□ 3.45
GRAMD1A-214ENST00000603907 EIF4G3O43432 1585 aaKnown RBP36.6■■■■□ 3.45
GRAMD1A-214ENST00000603907 DNMBPQ6XZF7 1577 aa36.57■■■■□ 3.45
GRAMD1A-214ENST00000603907 CHD1O14646 1710 aa36.43■■■■□ 3.42
GRAMD1A-214ENST00000603907 TARBP1Q13395 1621 aaKnown RBP36.43■■■■□ 3.42
GRAMD1A-214ENST00000603907 AQRO60306 1485 aaKnown RBP eCLIP36.39■■■■□ 3.421e-6■■□□□ 12.6
GRAMD1A-214ENST00000603907 CYB5RLQ6IPT4 315 aa36.35■■■■□ 3.41
GRAMD1A-214ENST00000603907 POLA1P09884 1462 aaPredicted RBP36.31■■■■□ 3.4
GRAMD1A-214ENST00000603907 FBLN2P98095 1184 aa36.28■■■■□ 3.4
GRAMD1A-214ENST00000603907 ARAP1Q96P48 1450 aa36.2■■■■□ 3.39
GRAMD1A-214ENST00000603907 RAD54L2Q9Y4B4 1467 aa36.16■■■■□ 3.38
GRAMD1A-214ENST00000603907 SOGA1O94964 1423 aa36.15■■■■□ 3.38
GRAMD1A-214ENST00000603907 TRHP20396 242 aaPredicted RBP36.13■■■■□ 3.37
GRAMD1A-214ENST00000603907 WDR97A6NE52 1622 aa36.1■■■■□ 3.37
GRAMD1A-214ENST00000603907 TDRD9Q8NDG6 1382 aaKnown RBP36.1■■■■□ 3.37
GRAMD1A-214ENST00000603907 SNAPC4Q5SXM2 1469 aa36.04■■■■□ 3.36
GRAMD1A-214ENST00000603907 FGD5Q6ZNL6 1462 aa36.03■■■■□ 3.36
GRAMD1A-214ENST00000603907 CLASP1Q7Z460 1538 aa35.97■■■■□ 3.35
GRAMD1A-214ENST00000603907 MAGI1Q96QZ7 1491 aaPredicted RBP35.96■■■■□ 3.35
GRAMD1A-214ENST00000603907 SYNJ1O43426 1573 aa35.96■■■■□ 3.35
GRAMD1A-214ENST00000603907 CHMP7Q8WUX9 453 aaPredicted RBP35.95■■■■□ 3.35
GRAMD1A-214ENST00000603907 CUX1P39880 1505 aa35.91■■■■□ 3.34
GRAMD1A-214ENST00000603907 GRIN2BQ13224 1484 aa35.91■■■■□ 3.34
GRAMD1A-214ENST00000603907 WRNQ14191 1432 aaPredicted RBP eCLIP35.85■■■■□ 3.33
GRAMD1A-214ENST00000603907 SYNJ2O15056 1496 aa35.83■■■■□ 3.33
GRAMD1A-214ENST00000603907 PBRM1Q86U86 1689 aa35.76■■■■□ 3.32
GRAMD1A-214ENST00000603907 GAPVD1Q14C86 1478 aa35.72■■■■□ 3.31
GRAMD1A-214ENST00000603907 TOP2BQ02880 1626 aa35.72■■■■□ 3.31
GRAMD1A-214ENST00000603907 BIVM-ERCC5R4GMW8 1640 aa35.7■■■■□ 3.31
GRAMD1A-214ENST00000603907 ABCA10Q8WWZ4 1543 aa35.6■■■■□ 3.29
GRAMD1A-214ENST00000603907 ABCA5Q8WWZ7 1642 aa35.6■■■■□ 3.29
GRAMD1A-214ENST00000603907 GRIN2AQ12879 1464 aa35.43■■■■□ 3.26
GRAMD1A-214ENST00000603907 AEBP2Q6ZN18 517 aaPredicted RBP35.43■■■■□ 3.26
GRAMD1A-214ENST00000603907 ADAMTS12P58397 1594 aa35.36■■■■□ 3.25
GRAMD1A-214ENST00000603907 ERCC6L2Q5T890 1561 aa35.34■■■■□ 3.25
GRAMD1A-214ENST00000603907 NUP160Q12769 1436 aa35.32■■■■□ 3.24
GRAMD1A-214ENST00000603907 CEP170Q5SW79 1584 aa35.3■■■■□ 3.24
GRAMD1A-214ENST00000603907 FHAD1B1AJZ9 1412 aa35.25■■■■□ 3.23
GRAMD1A-214ENST00000603907 SHROOM2Q13796 1616 aa35.22■■■■□ 3.23
GRAMD1A-214ENST00000603907 ERICH3Q5RHP9 1530 aa35.17■■■■□ 3.22
GRAMD1A-214ENST00000603907 CHIC1Q5VXU3 224 aa35.14■■■■□ 3.22
GRAMD1A-214ENST00000603907 KIF27Q86VH2 1401 aa35.09■■■■□ 3.21
GRAMD1A-214ENST00000603907 PRG4Q92954 1404 aaPredicted RBP35.02■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms