RNA–Protein interactions for RNA: ENST00000602716.5

PPFIA3-207, Transcript of PTPRF interacting protein alpha 3, humanhuman

TSL 1 (best)

Gene PPFIA3, Length 2,020 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA3-207ENST00000602716 NISCHQ9Y2I1 1504 aa40.11■■■■■ 4.01
PPFIA3-207ENST00000602716 CCDC180Q9P1Z9 1646 aa35.07■■■■□ 3.2
PPFIA3-207ENST00000602716 ZCCHC6Q5VYS8 1495 aaKnown RBP33.67■■■□□ 2.98
PPFIA3-207ENST00000602716 ABCC9O60706 1549 aa33.56■■■□□ 2.96
PPFIA3-207ENST00000602716 DCAF8L2P0C7V8 631 aa33.19■■■□□ 2.9
PPFIA3-207ENST00000602716 DCAF1Q9Y4B6 1507 aa33.1■■■□□ 2.89
PPFIA3-207ENST00000602716 MYO15BQ96JP2 1530 aa32.8■■■□□ 2.84
PPFIA3-207ENST00000602716 NACADO15069 1562 aa32.72■■■□□ 2.83
PPFIA3-207ENST00000602716 SHROOM4Q9ULL8 1493 aa32.61■■■□□ 2.81
PPFIA3-207ENST00000602716 RB1CC1Q8TDY2 1594 aa32.53■■■□□ 2.8
PPFIA3-207ENST00000602716 SCRIBQ14160 1630 aa32.33■■■□□ 2.77
PPFIA3-207ENST00000602716 UNC13AQ9UPW8 1703 aa31.93■■■□□ 2.7
PPFIA3-207ENST00000602716 BICRAQ9NZM4 1560 aa31.67■■■□□ 2.66
PPFIA3-207ENST00000602716 PABPN1Q86U42 306 aaKnown RBP eCLIP31.58■■■□□ 2.65
PPFIA3-207ENST00000602716 CECR2Q9BXF3 1484 aa31.28■■■□□ 2.6
PPFIA3-207ENST00000602716 SUPT5HO00267 1087 aaKnown RBP31.12■■■□□ 2.57
PPFIA3-207ENST00000602716 MROH2BQ7Z745 1585 aa31.04■■■□□ 2.56
PPFIA3-207ENST00000602716 RSF1Q96T23 1441 aaPredicted RBP31.02■■■□□ 2.56
PPFIA3-207ENST00000602716 BAZ1AQ9NRL2 1556 aaPredicted RBP30.96■■■□□ 2.55
PPFIA3-207ENST00000602716 SMARCA4P51532 1647 aa30.92■■■□□ 2.54
PPFIA3-207ENST00000602716 WIZO95785 1651 aa30.76■■■□□ 2.51
PPFIA3-207ENST00000602716 EIF4G1Q04637 1599 aaKnown RBP30.7■■■□□ 2.5
PPFIA3-207ENST00000602716 PEG3Q9GZU2 1588 aa30.52■■■□□ 2.48
PPFIA3-207ENST00000602716 ATAD2BQ9ULI0 1458 aa30.49■■■□□ 2.47
PPFIA3-207ENST00000602716 TOP2AP11388 1531 aaKnown RBP30.4■■■□□ 2.46
PPFIA3-207ENST00000602716 SMARCA2P51531 1590 aa30.39■■■□□ 2.46
PPFIA3-207ENST00000602716 CC2D2AQ9P2K1 1620 aa30.33■■■□□ 2.45
PPFIA3-207ENST00000602716 BAZ1BQ9UIG0 1483 aaKnown RBP30.28■■■□□ 2.44
PPFIA3-207ENST00000602716 NCAPD3P42695 1498 aa30.23■■■□□ 2.43
PPFIA3-207ENST00000602716 HMGXB3Q12766 1538 aa30.18■■■□□ 2.42
PPFIA3-207ENST00000602716 CCDC88BA6NC98 1476 aa30.09■■■□□ 2.41
PPFIA3-207ENST00000602716 DNAJC5BQ9UF47 199 aa29.91■■■□□ 2.38
PPFIA3-207ENST00000602716 CHIC1Q5VXU3 224 aa29.62■■■□□ 2.33
PPFIA3-207ENST00000602716 CFTRP13569 1480 aa29.5■■■□□ 2.31
PPFIA3-207ENST00000602716 CADPSQ9ULU8 1353 aa29.44■■■□□ 2.3
PPFIA3-207ENST00000602716 ABCC8Q09428 1581 aa29.42■■■□□ 2.3
PPFIA3-207ENST00000602716 NESP48681 1621 aa29.4■■■□□ 2.3
PPFIA3-207ENST00000602716 PRDM2Q13029 1718 aa29.27■■■□□ 2.28
PPFIA3-207ENST00000602716 LAMC3Q9Y6N6 1575 aa29.24■■■□□ 2.27
PPFIA3-207ENST00000602716 TRIM41Q8WV44 630 aa29.2■■■□□ 2.27
PPFIA3-207ENST00000602716 WRNQ14191 1432 aaPredicted RBP eCLIP29.18■■■□□ 2.26
PPFIA3-207ENST00000602716 FANCD2Q9BXW9 1451 aa29.15■■■□□ 2.26
PPFIA3-207ENST00000602716 SYNJ1O43426 1573 aa29.15■■■□□ 2.26
PPFIA3-207ENST00000602716 CUX1P39880 1505 aa29.04■■■□□ 2.24
PPFIA3-207ENST00000602716 PDS5BQ9NTI5 1447 aa29■■■□□ 2.23
PPFIA3-207ENST00000602716 KIF21AQ7Z4S6 1674 aa28.99■■■□□ 2.23
PPFIA3-207ENST00000602716 TOP2BQ02880 1626 aa28.98■■■□□ 2.23
PPFIA3-207ENST00000602716 CEP164Q9UPV0 1460 aa28.98■■■□□ 2.23
PPFIA3-207ENST00000602716 BIVM-ERCC5R4GMW8 1640 aa28.95■■■□□ 2.23
PPFIA3-207ENST00000602716 URB2Q14146 1524 aaKnown RBP28.85■■■□□ 2.21
PPFIA3-207ENST00000602716 DNMBPQ6XZF7 1577 aa28.82■■■□□ 2.2
PPFIA3-207ENST00000602716 TOPBP1Q92547 1522 aa28.81■■■□□ 2.2
PPFIA3-207ENST00000602716 SOGA1O94964 1423 aa28.78■■■□□ 2.2
PPFIA3-207ENST00000602716 FAM9AQ8IZU1 332 aaPredicted RBP28.77■■■□□ 2.2
PPFIA3-207ENST00000602716 FGD5Q6ZNL6 1462 aa28.75■■■□□ 2.19
PPFIA3-207ENST00000602716 ERCC6Q03468 1493 aa28.73■■■□□ 2.19
PPFIA3-207ENST00000602716 RUSC2Q8N2Y8 1516 aa28.73■■■□□ 2.19
PPFIA3-207ENST00000602716 MRC2Q9UBG0 1479 aa28.71■■■□□ 2.19
PPFIA3-207ENST00000602716 POLA1P09884 1462 aaPredicted RBP28.66■■■□□ 2.18
PPFIA3-207ENST00000602716 THOC2Q8NI27 1593 aaKnown RBP28.62■■■□□ 2.17
PPFIA3-207ENST00000602716 RAD54L2Q9Y4B4 1467 aa28.6■■■□□ 2.17
PPFIA3-207ENST00000602716 WDR62O43379 1518 aa28.59■■■□□ 2.17
PPFIA3-207ENST00000602716 LOC105371045A0A1W2PR82 267 aa28.51■■■□□ 2.15
PPFIA3-207ENST00000602716 EEA1Q15075 1411 aa28.5■■■□□ 2.15
PPFIA3-207ENST00000602716 CUX2O14529 1486 aa28.49■■■□□ 2.15
PPFIA3-207ENST00000602716 ABCA10Q8WWZ4 1543 aa28.45■■■□□ 2.15
PPFIA3-207ENST00000602716 EHMT2Q96KQ7 1210 aa28.44■■■□□ 2.14
PPFIA3-207ENST00000602716 WDR97A6NE52 1622 aa28.43■■■□□ 2.14
PPFIA3-207ENST00000602716 KIF27Q86VH2 1401 aa28.42■■■□□ 2.14
PPFIA3-207ENST00000602716 TARBP1Q13395 1621 aaKnown RBP28.41■■■□□ 2.14
PPFIA3-207ENST00000602716 CSRNP3Q8WYN3 585 aa28.4■■■□□ 2.14
PPFIA3-207ENST00000602716 TDRD9Q8NDG6 1382 aaKnown RBP28.31■■■□□ 2.12
PPFIA3-207ENST00000602716 ABCA5Q8WWZ7 1642 aa28.28■■■□□ 2.12
PPFIA3-207ENST00000602716 IFT140Q96RY7 1462 aa28.28■■■□□ 2.12
PPFIA3-207ENST00000602716 ZNF608Q9ULD9 1512 aaPredicted RBP28.25■■■□□ 2.11
PPFIA3-207ENST00000602716 IGF1RP08069 1367 aa28.24■■■□□ 2.11
PPFIA3-207ENST00000602716 KIF21BO75037 1637 aa28.23■■■□□ 2.11
PPFIA3-207ENST00000602716 PRXQ9BXM0 1461 aa28.21■■■□□ 2.11
PPFIA3-207ENST00000602716 RAPGEF2Q9Y4G8 1499 aa28.2■■■□□ 2.11
PPFIA3-207ENST00000602716 AQRO60306 1485 aaKnown RBP eCLIP28.19■■■□□ 2.13e-9■■■■■ 38.1
PPFIA3-207ENST00000602716 GAPVD1Q14C86 1478 aa28.19■■■□□ 2.1
PPFIA3-207ENST00000602716 GOLGA3Q08378 1498 aa28.17■■■□□ 2.1
PPFIA3-207ENST00000602716 EIF4G3O43432 1585 aaKnown RBP28.12■■■□□ 2.09
PPFIA3-207ENST00000602716 ERICH3Q5RHP9 1530 aa28.08■■■□□ 2.09
PPFIA3-207ENST00000602716 PBRM1Q86U86 1689 aa28.08■■■□□ 2.09
PPFIA3-207ENST00000602716 CARMIL1Q5VZK9 1371 aa28.07■■■□□ 2.08
PPFIA3-207ENST00000602716 UBTFP17480 764 aaKnown RBP28.02■■■□□ 2.08
PPFIA3-207ENST00000602716 CUL7Q14999 1698 aa28.02■■■□□ 2.08
PPFIA3-207ENST00000602716 GRIN2BQ13224 1484 aa28.01■■■□□ 2.07
PPFIA3-207ENST00000602716 TNIKQ9UKE5 1360 aa27.99■■■□□ 2.07
PPFIA3-207ENST00000602716 ADAMTS12P58397 1594 aa27.95■■■□□ 2.07
PPFIA3-207ENST00000602716 SNAPC4Q5SXM2 1469 aa27.94■■■□□ 2.06
PPFIA3-207ENST00000602716 CEP162Q5TB80 1403 aa27.89■■■□□ 2.06
PPFIA3-207ENST00000602716 FHAD1B1AJZ9 1412 aa27.86■■■□□ 2.05
PPFIA3-207ENST00000602716 MAGI1Q96QZ7 1491 aaPredicted RBP27.8■■■□□ 2.04
PPFIA3-207ENST00000602716 RANGAP1P46060 587 aaPredicted RBP27.77■■■□□ 2.04
PPFIA3-207ENST00000602716 CLIP1P30622 1438 aa27.72■■■□□ 2.03
PPFIA3-207ENST00000602716 SYNJ2O15056 1496 aa27.71■■■□□ 2.03
PPFIA3-207ENST00000602716 GRIN2AQ12879 1464 aa27.71■■■□□ 2.03
PPFIA3-207ENST00000602716 CTTNBP2Q8WZ74 1663 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms