RNA–Protein interactions for RNA: ENST00000600804.1

CHMP2A-207, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 2

Gene CHMP2A, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-207ENST00000600804 NISCHQ9Y2I1 1504 aa28.11■■■□□ 2.09
CHMP2A-207ENST00000600804 ABCC9O60706 1549 aa25.53■■□□□ 1.68
CHMP2A-207ENST00000600804 CCDC180Q9P1Z9 1646 aa25.41■■□□□ 1.66
CHMP2A-207ENST00000600804 RB1CC1Q8TDY2 1594 aa24.19■■□□□ 1.46
CHMP2A-207ENST00000600804 DNAJC5BQ9UF47 199 aa24.17■■□□□ 1.46
CHMP2A-207ENST00000600804 NACADO15069 1562 aa23.96■■□□□ 1.43
CHMP2A-207ENST00000600804 UNC13AQ9UPW8 1703 aa23.93■■□□□ 1.42
CHMP2A-207ENST00000600804 PABPN1Q86U42 306 aaKnown RBP eCLIP23.65■■□□□ 1.38
CHMP2A-207ENST00000600804 BICRAQ9NZM4 1560 aa23.64■■□□□ 1.37
CHMP2A-207ENST00000600804 DCAF8L2P0C7V8 631 aa23.61■■□□□ 1.37
CHMP2A-207ENST00000600804 MYO15BQ96JP2 1530 aa23.55■■□□□ 1.36
CHMP2A-207ENST00000600804 ZCCHC6Q5VYS8 1495 aaKnown RBP23.27■■□□□ 1.32
CHMP2A-207ENST00000600804 DCAF1Q9Y4B6 1507 aa23.18■■□□□ 1.3
CHMP2A-207ENST00000600804 CC2D2AQ9P2K1 1620 aa23.12■■□□□ 1.29
CHMP2A-207ENST00000600804 SHROOM4Q9ULL8 1493 aa23.11■■□□□ 1.29
CHMP2A-207ENST00000600804 SCRIBQ14160 1630 aa23.11■■□□□ 1.29
CHMP2A-207ENST00000600804 EIF4G1Q04637 1599 aaKnown RBP23■■□□□ 1.27
CHMP2A-207ENST00000600804 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
CHMP2A-207ENST00000600804 DNAJC5Q9H3Z4 198 aa22.24■■□□□ 1.15
CHMP2A-207ENST00000600804 NCAPD3P42695 1498 aa22.1■■□□□ 1.13
CHMP2A-207ENST00000600804 CUX2O14529 1486 aa22.04■■□□□ 1.12
CHMP2A-207ENST00000600804 SMARCA4P51532 1647 aa22.04■■□□□ 1.12
CHMP2A-207ENST00000600804 ATAD2BQ9ULI0 1458 aa22.03■■□□□ 1.12
CHMP2A-207ENST00000600804 HMGXB3Q12766 1538 aa21.97■■□□□ 1.11
CHMP2A-207ENST00000600804 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
CHMP2A-207ENST00000600804 SMARCA2P51531 1590 aa21.94■■□□□ 1.1
CHMP2A-207ENST00000600804 NESP48681 1621 aa21.92■■□□□ 1.1
CHMP2A-207ENST00000600804 THOC2Q8NI27 1593 aaKnown RBP21.82■■□□□ 1.08
CHMP2A-207ENST00000600804 PEG3Q9GZU2 1588 aa21.81■■□□□ 1.08
CHMP2A-207ENST00000600804 BAZ1AQ9NRL2 1556 aaPredicted RBP21.8■■□□□ 1.08
CHMP2A-207ENST00000600804 BAZ1BQ9UIG0 1483 aaKnown RBP21.77■■□□□ 1.08
CHMP2A-207ENST00000600804 KIF21AQ7Z4S6 1674 aa21.75■■□□□ 1.07
CHMP2A-207ENST00000600804 MROH2BQ7Z745 1585 aa21.7■■□□□ 1.06
CHMP2A-207ENST00000600804 LAMC3Q9Y6N6 1575 aa21.69■■□□□ 1.06
CHMP2A-207ENST00000600804 WIZO95785 1651 aa21.49■■□□□ 1.03
CHMP2A-207ENST00000600804 PDS5BQ9NTI5 1447 aa21.44■■□□□ 1.02
CHMP2A-207ENST00000600804 WDR62O43379 1518 aa21.39■■□□□ 1.01
CHMP2A-207ENST00000600804 CADPSQ9ULU8 1353 aa21.37■■□□□ 1.01
CHMP2A-207ENST00000600804 MRC2Q9UBG0 1479 aa21.36■■□□□ 1.01
CHMP2A-207ENST00000600804 CEP164Q9UPV0 1460 aa21.21■□□□□ 0.99
CHMP2A-207ENST00000600804 FANCD2Q9BXW9 1451 aa21.18■□□□□ 0.98
CHMP2A-207ENST00000600804 RSF1Q96T23 1441 aaPredicted RBP21.16■□□□□ 0.98
CHMP2A-207ENST00000600804 TRIM41Q8WV44 630 aa21.15■□□□□ 0.98
CHMP2A-207ENST00000600804 CFTRP13569 1480 aa21.14■□□□□ 0.98
CHMP2A-207ENST00000600804 PRDM2Q13029 1718 aa21.14■□□□□ 0.97
CHMP2A-207ENST00000600804 TOP2AP11388 1531 aaKnown RBP21.11■□□□□ 0.97
CHMP2A-207ENST00000600804 URB2Q14146 1524 aaKnown RBP21.09■□□□□ 0.97
CHMP2A-207ENST00000600804 OSCARQ8IYS5 282 aa20.88■□□□□ 0.93
CHMP2A-207ENST00000600804 RIMBP3CA6NJZ7 1639 aa20.88■□□□□ 0.93
CHMP2A-207ENST00000600804 RIMBP3BA6NNM3 1639 aa20.88■□□□□ 0.93
CHMP2A-207ENST00000600804 RIMBP3Q9UFD9 1639 aa20.88■□□□□ 0.93
CHMP2A-207ENST00000600804 ZNF608Q9ULD9 1512 aaPredicted RBP20.87■□□□□ 0.93
CHMP2A-207ENST00000600804 CCDC88BA6NC98 1476 aa20.85■□□□□ 0.93
CHMP2A-207ENST00000600804 TOPBP1Q92547 1522 aa20.79■□□□□ 0.92
CHMP2A-207ENST00000600804 SUPT5HO00267 1087 aaKnown RBP20.79■□□□□ 0.92
CHMP2A-207ENST00000600804 EIF4G3O43432 1585 aaKnown RBP20.79■□□□□ 0.92
CHMP2A-207ENST00000600804 IFT140Q96RY7 1462 aa20.78■□□□□ 0.92
CHMP2A-207ENST00000600804 CHD1O14646 1710 aa20.75■□□□□ 0.91
CHMP2A-207ENST00000600804 ARHGEF11O15085 1522 aa20.73■□□□□ 0.91
CHMP2A-207ENST00000600804 TARBP1Q13395 1621 aaKnown RBP20.72■□□□□ 0.91
CHMP2A-207ENST00000600804 DNMBPQ6XZF7 1577 aa20.72■□□□□ 0.91
CHMP2A-207ENST00000600804 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
CHMP2A-207ENST00000600804 AQRO60306 1485 aaKnown RBP eCLIP20.59■□□□□ 0.897e-6■■□□□ 12.2
CHMP2A-207ENST00000600804 POLA1P09884 1462 aaPredicted RBP20.57■□□□□ 0.88
CHMP2A-207ENST00000600804 ARAP1Q96P48 1450 aa20.52■□□□□ 0.88
CHMP2A-207ENST00000600804 RAD54L2Q9Y4B4 1467 aa20.5■□□□□ 0.87
CHMP2A-207ENST00000600804 CYB5RLQ6IPT4 315 aa20.45■□□□□ 0.86
CHMP2A-207ENST00000600804 WDR97A6NE52 1622 aa20.44■□□□□ 0.86
CHMP2A-207ENST00000600804 CLASP1Q7Z460 1538 aa20.42■□□□□ 0.86
CHMP2A-207ENST00000600804 FGD5Q6ZNL6 1462 aa20.41■□□□□ 0.86
CHMP2A-207ENST00000600804 CUX1P39880 1505 aa20.39■□□□□ 0.85
CHMP2A-207ENST00000600804 SNAPC4Q5SXM2 1469 aa20.39■□□□□ 0.85
CHMP2A-207ENST00000600804 TDRD9Q8NDG6 1382 aaKnown RBP20.39■□□□□ 0.85
CHMP2A-207ENST00000600804 SOGA1O94964 1423 aa20.38■□□□□ 0.85
CHMP2A-207ENST00000600804 PBRM1Q86U86 1689 aa20.36■□□□□ 0.85
CHMP2A-207ENST00000600804 FBLN2P98095 1184 aa20.36■□□□□ 0.85
CHMP2A-207ENST00000600804 SYNJ1O43426 1573 aa20.29■□□□□ 0.84
CHMP2A-207ENST00000600804 MAGI1Q96QZ7 1491 aaPredicted RBP20.29■□□□□ 0.84
CHMP2A-207ENST00000600804 GRIN2BQ13224 1484 aa20.25■□□□□ 0.83
CHMP2A-207ENST00000600804 ABCA5Q8WWZ7 1642 aa20.24■□□□□ 0.83
CHMP2A-207ENST00000600804 TRHP20396 242 aaPredicted RBP20.23■□□□□ 0.83
CHMP2A-207ENST00000600804 SYNJ2O15056 1496 aa20.23■□□□□ 0.83
CHMP2A-207ENST00000600804 CHMP7Q8WUX9 453 aaPredicted RBP20.16■□□□□ 0.82
CHMP2A-207ENST00000600804 GAPVD1Q14C86 1478 aa20.16■□□□□ 0.82
CHMP2A-207ENST00000600804 ABCA10Q8WWZ4 1543 aa20.14■□□□□ 0.81
CHMP2A-207ENST00000600804 ERCC6L2Q5T890 1561 aa20.13■□□□□ 0.81
CHMP2A-207ENST00000600804 ADAMTS12P58397 1594 aa20.08■□□□□ 0.8
CHMP2A-207ENST00000600804 BIVM-ERCC5R4GMW8 1640 aa20.07■□□□□ 0.8
CHMP2A-207ENST00000600804 CEP170Q5SW79 1584 aa20.06■□□□□ 0.8
CHMP2A-207ENST00000600804 GRIN2AQ12879 1464 aa20.04■□□□□ 0.8
CHMP2A-207ENST00000600804 SHROOM2Q13796 1616 aa20.02■□□□□ 0.8
CHMP2A-207ENST00000600804 TOP2BQ02880 1626 aa20■□□□□ 0.79
CHMP2A-207ENST00000600804 NUP160Q12769 1436 aa19.98■□□□□ 0.79
CHMP2A-207ENST00000600804 KIF13AQ9H1H9 1805 aa19.97■□□□□ 0.79
CHMP2A-207ENST00000600804 WRNQ14191 1432 aaPredicted RBP eCLIP19.93■□□□□ 0.78
CHMP2A-207ENST00000600804 ERICH3Q5RHP9 1530 aa19.88■□□□□ 0.77
CHMP2A-207ENST00000600804 FHAD1B1AJZ9 1412 aa19.87■□□□□ 0.77
CHMP2A-207ENST00000600804 RUSC2Q8N2Y8 1516 aa19.82■□□□□ 0.76
CHMP2A-207ENST00000600804 AEBP2Q6ZN18 517 aaPredicted RBP19.75■□□□□ 0.75
CHMP2A-207ENST00000600804 PRG4Q92954 1404 aaPredicted RBP19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms